Gene Information

Name : Psest_4016 (Psest_4016)
Accession : YP_007242119.1
Strain : Pseudomonas stutzeri RCH2
Genome accession: NC_019936
Putative virulence/resistance : Unknown
Product : integrase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4193062 - 4194237 bp
Length : 1176 bp
Strand : +
Note : PFAM: Phage integrase family

DNA sequence :
ATGCCTCTGACGGCCTTGCAGGTGAAGAGCGCCGCACCACGCAAAAGTGACTACGGCCTTGCTGATGGAGGCGGTTTATT
CCTCTGGATTCGCGCAGCAGGCGGCAAGTCTTGGCGCTTCCGATTCCGCCTGGATGGCAAGCAGTCTCATATTTCCCTTG
GCACCATCGACAAGGTAACGCTCGCGCAGGCTCGACAGCTGGCATCGGATGCACGCCAGCTTGTGGCGCAGGGCCGGCAC
CCCGGGCTTGAGCGCAAGGTAATGCGAGCTCAGGCGGCAATGTCTCGCGCCAATACCTTCAAAAGCCTTGCGCTGGAGTG
GCATCAGCATAAGGCTCCACGCTGGTCGGTCGGGTACGCCGGCGACGTAGTGGAAGCCTTCGAGCTGGATGTTTTCCCTC
AAGTGGGAAGCCTGCCGCTAACTGACATCAAGCCAATGCAGTGGCTGCAGGTATTCCGCCGCATTGAATCACGAGGCGCT
CTGGAGAAGCTGCGCAAGGTTCGACAGCGCTGCCAGGAGGTGTACCGTTTCGCAATTGCTACCGGTCGCGCCGAGTACAA
CCCTATTGCCGACATTGGCGGAGCACTGCAGACGCCTACCTCACGGCATTACCCTTTCTTGCCCATTGCTGAAATCCCGG
CACTGATACGCAGCATTCAGGCATGTCCGGGACATGACGTCGTGAAGATCGCCACTCGCCTTCTGATTCTGACCGGAGTG
CGTACAGCTGAATTGCGTGGAGTCCCCTGGTCGGAGTTTGACCTCGACAAAGCGCTCTGGCTGATTCCGGCTGCGCGCAT
GAAGATGCGCCGCGCCCACCTTGTTCCACTCTCCCAGCAGGCTGTGGCTGTACTGCGCGAACTGGAACGCATTACTGGTG
GCTACACGCTCGCATTCCCCGGCCGTAACGACCCGGCAAAGCCCATGAGCGAAGCCGCCATCAACCAACTGCTGAAGCGC
TCCGGTTACGACGGACGCGCCACTGGCCATGGATTCCGCCACACGATGTCCACCACCCTGCACGAACAGGGGTACCCCAG
CGAGTGGGTCGAAACCCAGTTGGCGCATGTGGACAAGAACAGCATTCGCGGCACCTACAACCATGCCCAGTATTTGGAGG
GGCGGCGAGAGATGCTTCAGTGGTATGCCAACCATGTGGATGAACTACATGACTAA

Protein sequence :
MPLTALQVKSAAPRKSDYGLADGGGLFLWIRAAGGKSWRFRFRLDGKQSHISLGTIDKVTLAQARQLASDARQLVAQGRH
PGLERKVMRAQAAMSRANTFKSLALEWHQHKAPRWSVGYAGDVVEAFELDVFPQVGSLPLTDIKPMQWLQVFRRIESRGA
LEKLRKVRQRCQEVYRFAIATGRAEYNPIADIGGALQTPTSRHYPFLPIAEIPALIRSIQACPGHDVVKIATRLLILTGV
RTAELRGVPWSEFDLDKALWLIPAARMKMRRAHLVPLSQQAVAVLRELERITGGYTLAFPGRNDPAKPMSEAAINQLLKR
SGYDGRATGHGFRHTMSTTLHEQGYPSEWVETQLAHVDKNSIRGTYNHAQYLEGRREMLQWYANHVDELHD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ESA_03025 YP_001439090.1 hypothetical protein Not tested Not named Protein 8e-109 54
int AAC31482.1 CP4-like integrase Not tested LEE Protein 5e-108 53
int ACU09430.1 integrase Not tested LEE Protein 5e-108 53
intL NP_290239.1 integrase for prophage 933L and the LEE pathogenicity island Not tested LEE Protein 7e-108 53
ECs4534 NP_312561.1 integrase Not tested LEE Protein 7e-108 53
unnamed AFX83955.1 integrase Not tested SE-PAI Protein 1e-108 53
int CAC39282.1 integrase Not tested LPA Protein 1e-108 53
aec33 AAW51716.1 Int Not tested AGI-3 Protein 1e-108 53
int AAD44730.1 Int Not tested SHI-2 Protein 2e-107 53
S4835 NP_839238.1 integrase Not tested SHI-2 Protein 1e-106 53
SF3698 NP_709437.1 integrase Not tested SHI-2 Protein 1e-106 53
int AAD54663.1 Sai integrase Not tested SHI-2 Protein 8e-107 53

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Psest_4016 YP_007242119.1 integrase VFG0783 Protein 3e-108 53
Psest_4016 YP_007242119.1 integrase VFG0598 Protein 5e-107 53