Gene Information

Name : Psest_3476 (Psest_3476)
Accession : YP_007241595.1
Strain : Pseudomonas stutzeri RCH2
Genome accession: NC_019936
Putative virulence/resistance : Virulence
Product : response regulator with CheY-like receiver domain and winged-helix DNA-binding domain
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3645417 - 3646076 bp
Length : 660 bp
Strand : +
Note : PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal

DNA sequence :
ATGCGCATTCTGCTGGTGGAAGACGATCGTGCCCTCGGTGAGGGCATCCGCACCGCACTCAAGCCCGAGGGCTACACGGT
CGACTGGCTGCAGGACGGCGCCAGCGCGTTGCACGCGCTCAGCCACGAGAGCTTCGAGCTGGCGATTCTCGACCTTGGCT
TGCCGCGATTGGATGGGCTGGAAGTGCTCAAGCGCCTGCGCGCTGCCGCCAACCCAGTGCCGGTGCTGGTGCTCACCGCA
CGCGATGCCACCGGCGACCGCATTGCCGGCCTGGATGCCGGTGCCGACGATTATCTGGTCAAGCCGTTCGACGTGGCCGA
GCTCAAGGCGCGTCTGCGCGCCCTGCTCCGGCGCAGCTTCAACCGCCCGGAGCCGAGCCTGGAATACCGCGGCATCCTGC
TCGATCCGGTCAACCAGCAGGTCAGTTACCAGGGCACGCCGATCAATCTGCCGCGCAAGGAGTTCGTCCTGCTCCACGAA
CTGCTCGCCCAGCCCGGCCGCGTGCTGACCCGCGACCGCCTGCAACAGGTGCTCTACGGCTGGGACGAGGAAGTCGAGAG
CAATGCGCTGGAGGTGCACATCCACCACCTGCGCAAAAAATTCTTTCCCGAGCTGATTCGCACCGTGCGCGGTGTCGGCT
ATCTGGTGGACAAATGCTGA

Protein sequence :
MRILLVEDDRALGEGIRTALKPEGYTVDWLQDGASALHALSHESFELAILDLGLPRLDGLEVLKRLRAAANPVPVLVLTA
RDATGDRIAGLDAGADDYLVKPFDVAELKARLRALLRRSFNRPEPSLEYRGILLDPVNQQVSYQGTPINLPRKEFVLLHE
LLAQPGRVLTRDRLQQVLYGWDEEVESNALEVHIHHLRKKFFPELIRTVRGVGYLVDKC

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 1e-33 46
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 7e-30 43
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 4e-29 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Psest_3476 YP_007241595.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0487 Protein 9e-34 47
Psest_3476 YP_007241595.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0197 Protein 5e-31 43
Psest_3476 YP_007241595.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0083 Protein 4e-29 41
Psest_3476 YP_007241595.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0308 Protein 2e-27 41
Psest_3476 YP_007241595.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0288 Protein 8e-26 41
Psest_3476 YP_007241595.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0638 Protein 2e-23 41
Psest_3476 YP_007241595.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain U82965.2.orf14.gene. Protein 4e-24 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Psest_3476 YP_007241595.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain VFG1390 Protein 7e-36 48
Psest_3476 YP_007241595.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain VFG0473 Protein 1e-34 47
Psest_3476 YP_007241595.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain VFG0596 Protein 2e-30 43
Psest_3476 YP_007241595.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain VFG1389 Protein 7e-23 41