Gene Information

Name : Psest_1732 (Psest_1732)
Accession : YP_007239911.1
Strain : Pseudomonas stutzeri RCH2
Genome accession: NC_019936
Putative virulence/resistance : Virulence
Product : flagellar biosynthetic protein FliP
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1837157 - 1837933 bp
Length : 777 bp
Strand : +
Note : PFAM: FliP family; TIGRFAM: flagellar biosynthetic protein FliP

DNA sequence :
ATGTTGCGCATTCTGCTAGTGGCGGTGCTGATGCTGTGCGGCCCGCTTGCCATGGCGCAGGAGCCGTCCGGCATCCTGGC
GCAGGGCAACAACCCCTTGTCGATTCCTGCGATAACGCTAACTACCGACGCCGAAGGGCAGCAGGAATACTCGGTCAGCC
TGCAGATTCTGCTGATCATGACGGCGCTGAGCTTCATTCCGGCGTTCGTCATGCTGATGACCAGTTTCACCCGGATCATC
ATCGTCTTTTCCATTCTGCGTCAGGCCCTGGGGCTGCAGCAGACGCCGTCGAACCAGATTCTCATTGGCCTGACGCTGTT
CCTCACGTTGTTCATCATGGCGCCGGTATTCGACCGGATTAACCAGGACGCGCTGCAGCCTTATCTCAGCGAGCAGATAC
CGGCACAGGAGGCGATCTCCCGCGCCGAGGTGCCATTGAAGAACTTCATGCTGGCGCAGACCCGCGAGAGCGATCTGGAG
CTTTTCGTCAGGCTTTCGCGACGTACCGACATCGCTTCGCCGGAAGCCGCACCAATGACTATCCTGGTGCCGGCCTTCGT
CACTTCGGAGCTGAAGACGGCCTTCCAGATCGGCTTCATGATCTTCATTCCGTTTCTGATCATCGACATGGTGGTGGCCA
GCGTGCTGATGGCAATGGGCATGATGATGCTCTCGCCGCTGATCATTTCGTTGCCGTTCAAGATCATGTTGTTCGTCCTG
GTGGATGGCTGGGGGCTGATCATCGGTACTCTCGCCGGCAGCTTCGGCACCCTTTAG

Protein sequence :
MLRILLVAVLMLCGPLAMAQEPSGILAQGNNPLSIPAITLTTDAEGQQEYSVSLQILLIMTALSFIPAFVMLMTSFTRII
IVFSILRQALGLQQTPSNQILIGLTLFLTLFIMAPVFDRINQDALQPYLSEQIPAQEAISRAEVPLKNFMLAQTRESDLE
LFVRLSRRTDIASPEAAPMTILVPAFVTSELKTAFQIGFMIFIPFLIIDMVVASVLMAMGMMMLSPLIISLPFKIMLFVL
VDGWGLIIGTLAGSFGTL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 1e-27 42
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 1e-27 41
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 1e-27 41
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 1e-27 41
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 2e-27 41
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 2e-27 41
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 4e-25 41
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 4e-25 41
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 4e-25 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Psest_1732 YP_007239911.1 flagellar biosynthetic protein FliP VFG1259 Protein 2e-87 87
Psest_1732 YP_007239911.1 flagellar biosynthetic protein FliP VFG2016 Protein 7e-63 62
Psest_1732 YP_007239911.1 flagellar biosynthetic protein FliP VFG2494 Protein 3e-57 60
Psest_1732 YP_007239911.1 flagellar biosynthetic protein FliP VFG2338 Protein 4e-54 58
Psest_1732 YP_007239911.1 flagellar biosynthetic protein FliP VFG0519 Protein 6e-28 41
Psest_1732 YP_007239911.1 flagellar biosynthetic protein FliP VFG0188 Protein 5e-29 41
Psest_1732 YP_007239911.1 flagellar biosynthetic protein FliP VFG0394 Protein 2e-28 41