Gene Information

Name : Psest_0133 (Psest_0133)
Accession : YP_007238376.1
Strain : Pseudomonas stutzeri RCH2
Genome accession: NC_019936
Putative virulence/resistance : Virulence
Product : type VI secretion protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 132285 - 132791 bp
Length : 507 bp
Strand : -
Note : PFAM: Protein of unknown function (DUF770); TIGRFAM: type VI secretion protein, VC_A0107 family

DNA sequence : 
ATGGCCAAAGAAGGCTCGGTTGCACCCAAGGAACGCATCAACGTCACGTTCAAGCCGGCCACCGGCAACGCTCAGGAAGA
GGTCGAGCTGCCCCTCAAGCTGATGGTGCTGGGCGACTTCACCCAGCGCGCCGACGACCGCAAGATCGAGGACCGCAAGC
CCATCGCCATCGACAAGAACAGCTTCGACGAGGTCCTGGCCAAGCAGGAGCTGAACCTGACCTTCGGCGTGCCGAACCGT
CTGCAGGACGAGCAGACCGACGACGAACTGGCCGTGCAGCTGCGCATCAATTCGATGAAGGACTTCAACCCGGCCAATCT
GGTCGAGCAGGTTCCGGAGCTGAAGAAACTGATGGAACTGCGCGACGCCCTGGTCGCACTCAAGGGCCCGCTGGGCAATG
CTCCGGCCTTCCGCAAGGCCATCGAAAGCGTACTCGCCGACGACGATTCGCGTGACCGCGTACTCGGCGAACTGGGCCTG
GCGGCCAAAGAGAAGCTGGACGCCTGA

Protein sequence : 
MAKEGSVAPKERINVTFKPATGNAQEEVELPLKLMVLGDFTQRADDRKIEDRKPIAIDKNSFDEVLAKQELNLTFGVPNR
LQDEQTDDELAVQLRINSMKDFNPANLVEQVPELKKLMELRDALVALKGPLGNAPAFRKAIESVLADDDSRDRVLGELGL
AAKEKLDA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
HH0248 NP_859779.1 hypothetical protein Not tested HHGI1 Protein 2e-32 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Psest_0133 YP_007238376.1 type VI secretion protein VFG2092 Protein 4e-42 55
Psest_0133 YP_007238376.1 type VI secretion protein VFG2474 Protein 1e-40 52