Gene Information

Name : B488_10170 (B488_10170)
Accession : YP_007233264.1
Strain : Liberibacter crescens BT-1
Genome accession: NC_019907
Putative virulence/resistance : Virulence
Product : Manganese ABC transporter inner membrane permease SitD
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1112071 - 1112919 bp
Length : 849 bp
Strand : +
Note : -

DNA sequence : 
ATGAGTAATTTACTTGATCATTATCTTTTGCCTCTGAAGTTGCCTTTTATGCAAAACAGTTTGCTCATCGCTCTAACGAT
TGCAATCCCTATGGCTATGCTATCTTGCCTTCTTATTTTAAAACGATGGTCTCTTATAGGGGATGGTATTTCACATTCTA
TACTCCCTGGTGTTGTTTTGGCTTATATTATAAGGATTCCTTTAGAAATTGGTGCCTTTGCAGCAGGAATGTTCTGTTCC
TTATCTGTAGGCTATCTAAAGAATAAGAGCTCTATTAAGGATGACACACTCCTTGGAATTGTATTTTCTGGAATGTTTGC
TCTTGGAGTAATGATGATGGTCAAAGTTGAAAGCGACGTCCATCTGGAACATATTCTTTTTGGTGACATGCTCGGAATAT
CCTCTTCAGATTTATTAAATACTGCTTTAATTGCTTTGATTACCTTTGTCTTTTTAATACTTAAAGGTGCTGATTTAATG
TTATGCGCTTTTGATCCACAACATGCTCGTGCTATTTGTTTGCCTTTAAAATTTTTGCATTATGGTTTATTAATATCTAT
ATCTCTCGTTGTTGTAGGCGCTTTAAAGTCTACCGGCCTTATACTGTCTATTGCACTTCTTATACTCCCTGGATCTATCG
CGTATCTTATAGCACGCACTTATAAATCAATGATCATCATTTCTATTGCAGTTGCTGTAATATGCTGTTTTATAGGCGTC
TATTTTAGCTTTTTTATAAACAGCGCTCCTGCTCCAACGATTGTACTAACAATGACTACTACTTTTATAACTGCTGCTAT
TTATTCAAATTTAAGATCTTATCGACTTTCAAAAAAGAACTTTTCCTAA

Protein sequence : 
MSNLLDHYLLPLKLPFMQNSLLIALTIAIPMAMLSCLLILKRWSLIGDGISHSILPGVVLAYIIRIPLEIGAFAAGMFCS
LSVGYLKNKSSIKDDTLLGIVFSGMFALGVMMMVKVESDVHLEHILFGDMLGISSSDLLNTALIALITFVFLILKGADLM
LCAFDPQHARAICLPLKFLHYGLLISISLVVVGALKSTGLILSIALLILPGSIAYLIARTYKSMIIISIAVAVICCFIGV
YFSFFINSAPAPTIVLTMTTTFITAAIYSNLRSYRLSKKNFS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitD NP_461785.1 permease Virulence SPI-1 Protein 4e-56 53
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 3e-56 53
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 4e-56 52
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 4e-56 52
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 4e-56 52

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
B488_10170 YP_007233264.1 Manganese ABC transporter inner membrane permease SitD BAC0352 Protein 2e-56 53
B488_10170 YP_007233264.1 Manganese ABC transporter inner membrane permease SitD BAC0442 Protein 4e-55 48

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
B488_10170 YP_007233264.1 Manganese ABC transporter inner membrane permease SitD VFG0528 Protein 2e-56 53