Gene Information

Name : B488_10160 (B488_10160)
Accession : YP_007233263.1
Strain : Liberibacter crescens BT-1
Genome accession: NC_019907
Putative virulence/resistance : Virulence
Product : Manganese ABC transporter inner membrane permease SitC
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1111206 - 1112000 bp
Length : 795 bp
Strand : +
Note : -

DNA sequence : 
ATGATTGATATTCTTTTAGAACCATTTTCTTATAAATATATGAACAATGCTATATGGATCAGCACGTTAGTAGGATACAT
ATGTGCTTTCCTATCAGCTTATTTAACCCTAAAAGGCTGGTCTCTTATTGGCGACGCACTTTCACATTCAATTATTCCAG
GCGTAGTTGTTGCTAACATGGTAGGTTTACCTTTTTCTATTTGTGCTTTTATTTCAGGAGGATTAGCATCTGGCGCTATG
GTACTTATAAAAAAGAAAACACACCTACAAGAAGATGCAGTTATTGGTATAATATTCACAAGCTTCTTCTCAATGGGATT
GTTTATTTTGTCATTATACCCATCTTCAATCAATATTCATACCATTCTCTTCGGCAATGTCCTTGCCATAACGAAGCCTG
ACACCTTACAAGTATTAATCATCAGTGCTGTGACATTAGCTGTTTTAATTTTGAAATGGCGAGATTTTATGATTTTATTT
TTTGATGAAAATCATGCCCAATCAATTGGAATGAATACAAATTATCTAAAAATACTATTTTTTACCTTATTATCTGCGTC
AACTATAGCAGCCTTCCAAACTGTTGGAGCATTTCTTGTCATAGCCATGGTAGTAACACCAGGAGCAACAGCATATTTAC
TTACAAAGTCTTTTGGAAAGCTTATTATTATAAGTTCTATCATCGGCGCTGTAACTAGTTTTTCAGGAGCTTATATAAGC
TACTTTCTCAATTGTGCTACAGGAGGAATTATTGTTGTTATGCAAACCATTTTTTTCTTTTGGCGTTTTTTATAA

Protein sequence : 
MIDILLEPFSYKYMNNAIWISTLVGYICAFLSAYLTLKGWSLIGDALSHSIIPGVVVANMVGLPFSICAFISGGLASGAM
VLIKKKTHLQEDAVIGIIFTSFFSMGLFILSLYPSSINIHTILFGNVLAITKPDTLQVLIISAVTLAVLILKWRDFMILF
FDENHAQSIGMNTNYLKILFFTLLSASTIAAFQTVGAFLVIAMVVTPGATAYLLTKSFGKLIIISSIIGAVTSFSGAYIS
YFLNCATGGIIVVMQTIFFFWRFL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 4e-76 64
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 4e-76 64
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 4e-76 64
sitC NP_461784.1 permease Virulence SPI-1 Protein 4e-76 64
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 3e-76 64

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
B488_10160 YP_007233263.1 Manganese ABC transporter inner membrane permease SitC BAC0351 Protein 2e-76 64
B488_10160 YP_007233263.1 Manganese ABC transporter inner membrane permease SitC BAC0441 Protein 3e-68 60
B488_10160 YP_007233263.1 Manganese ABC transporter inner membrane permease SitC BAC0442 Protein 5e-44 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
B488_10160 YP_007233263.1 Manganese ABC transporter inner membrane permease SitC VFG0527 Protein 2e-76 64