Gene Information

Name : B488_10140 (B488_10140)
Accession : YP_007233261.1
Strain : Liberibacter crescens BT-1
Genome accession: NC_019907
Putative virulence/resistance : Virulence
Product : Manganese ABC transporter substrate-binding protein SitA
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1109519 - 1110397 bp
Length : 879 bp
Strand : +
Note : -

DNA sequence : 
ATGTTTTATTTAACAACTTTAACTATAATTCTTACTTTTATGACACCGCTTTCAGCACTTGCAAAGATAAAGGTGGTTAC
GACGTTTTCTATTATTGCTGATATGACTCAAAATATTGCAGGAGAACTTGCAACCGTAGAAAATATAATCAAACCAGGTG
CAGAAGTTCATAATTATCAAGCCACTCCAGGGGATATCCTTAAAGTTCAGAGCGCTGATCTCGTTCTTGTTAACGGTTTG
GGGCTTGAAAAATGGTTCGAAAAATTTCTTATTAATTTAAAAAATGTTCCACACGCAACGTTGACCAAAGGAATTCAACC
TTTGAGTATTTCATCAGGTCCATATCAAGGAAAACCTAATCCTCATGCATGGATGTCTGATCATAATGGTTTTATTTATA
TTGATAATATTTGTAAGGCTTTAATTAAAATCGACCCTGAAAATTCTGATTCATATACATCTAATGCTCTTATCTACAAA
GAAAAACTCAAAAAAATGACACAACCTTTCAGACATCAAATTGAGAGTCTTCCAGAAAACAAACGTTGGCTTGTAACAAG
CGAAGGAGCATTTTCATATTTGGCACGTGATTTTGGTCTTAAAGAATTATATCTATGGCCTGTTAATACTGATTCTGAAG
GAACCCCCCAACAAGTTCGCAAAGTCATTGATATGGTGCGTAAGCATAACATTAACGTCATTTTTTCAGAAAGCACAGTT
TCAGACAAACCAGCACAACAAGTAGCACTGGAAACCGGAGCAAAATATGGAGGCATACTTTATGTAGACTCTATCAGTGA
CAAGAACGGCCCTGTACCAACCTATTTAGATCTTCTTAAAGTAACAGTTGATACTATTGTACAAGGTCTATCCTCATGA

Protein sequence : 
MFYLTTLTIILTFMTPLSALAKIKVVTTFSIIADMTQNIAGELATVENIIKPGAEVHNYQATPGDILKVQSADLVLVNGL
GLEKWFEKFLINLKNVPHATLTKGIQPLSISSGPYQGKPNPHAWMSDHNGFIYIDNICKALIKIDPENSDSYTSNALIYK
EKLKKMTQPFRHQIESLPENKRWLVTSEGAFSYLARDFGLKELYLWPVNTDSEGTPQQVRKVIDMVRKHNINVIFSESTV
SDKPAQQVALETGAKYGGILYVDSISDKNGPVPTYLDLLKVTVDTIVQGLSS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitA NP_806464.1 iron transporter periplasmic-binding protein Virulence SPI-1 Protein 1e-88 60
sitA NP_461782.1 periplasmic binding protein Virulence SPI-1 Protein 1e-88 60
sitA AAD41065.1 SitA Virulence centisome 63 pathogenicity island Protein 7e-89 60
sitA YP_217781.1 iron transporter: fur regulated Virulence SPI-1 Protein 1e-88 60
sitA NP_457255.1 Iron transport protein, periplasmic-binding protein Virulence SPI-1 Protein 1e-88 60

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
B488_10140 YP_007233261.1 Manganese ABC transporter substrate-binding protein SitA BAC0349 Protein 4e-89 60
B488_10140 YP_007233261.1 Manganese ABC transporter substrate-binding protein SitA BAC0439 Protein 5e-85 59

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
B488_10140 YP_007233261.1 Manganese ABC transporter substrate-binding protein SitA VFG0525 Protein 4e-89 60