Gene Information

Name : B479_26854 (B479_26854)
Accession : YP_007232163.1
Strain :
Genome accession: NC_019906
Putative virulence/resistance : Resistance
Product : tetracycline efflux protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 7865 - 9139 bp
Length : 1275 bp
Strand : +
Note : COG0477 Permeases of the major facilitator superfamily

DNA sequence : 
ATGTCCACCAACTTATCAGTGATAAAGAATCCGCGCGTTCAATCGGACCAGCGGAGGCTGGTCCGGAGGCCAGACGTGAA
ACCCAACAGACCCCTGATCGTAATTCTGAGCACTGTCGCGCTCGACGCTGTCGGCATCGGCCTGATTATGCCGGTGCTGC
CGGGCCTCCTGCGCGATCTGGTTCACTCGAACGACGTCACCGCCCACTATGGCATTCTGCTGGCGCTGTATGCGTTGGTG
CAATTTGCCTGCGCACCTGTGCTGGGCGCGCTGTCGGATCGTTTCGGGCGGCGGCCAATCTTGCTCGTCTCGCTGGCCGG
CGCCACTGTCGACTACGCCATCATGGCGACAGCGCCTTTCCTTTGGGTTCTCTATATCGGGCGGATCGTGGCCGGCATCA
CCGGGGCGACTGGGGCGGTAGCCGGCGCTTATATTGCCGATATCACTGATGGCGATGAGCGCGCGCGGCACTTCGGCTTC
ATGAGCGCCTGTTTCGGGTTCGGGATGGTCGCGGGACCTGTGCTCGGTGGGCTGATGGGCGGTTTCTCCCCCCACGCTCC
GTTCTTCGCCGCGGCAGCCTTGAACGGCCTCAATTTCCTGACGGGCTGTTTCCTTTTGCCGGAGTCGCACAAAGGCGAAC
GCCGGCCGTTACGCCGGGAGGCTCTCAACCCGCTCGCTTCGTTCCGGTGGGCCCGGGGCATGACCGTCGTCGCCGCCCTG
ATGGCGGTCTTCTTCATCATGCAACTTGTCGGACAGGTGCCGGCCGCGCTTTGGGTCATTTTCGGCGAGGATCGCTTTCA
CTGGGACGCGACCACGATCGGCATTTCGCTTGCCGCATTTGGCATTCTGCATTCACTCGCCCAGGCAATGATCACCGGCC
CTGTAGCCGCCCGGCTCGGCGAAAGGCGGGCACTCATGCTCGGAATGATTGCCGACGGCACAGGCTACATCCTGCTTGCC
TTCGCGACACGGGGATGGATGGCGTTCCCGATCATGGTCCTGCTTGCTTCGGGTGGCATCGGAATGCCGGCGCTGCAAAC
AATGTTGTCCAGGCAGGTGGATGAGGAACGTCAGGGGCAGCTGCAAGGCTCACTGGCGGCGCTCACCAGCCTGACCTCGA
TCGTCGGACCCCTCCTCTTCACGGCGATCTATGCGGCTTCTATAACAACGTGGAACGGGTGGGCATGGATTGCAGGCGCT
GCCCTCTACTTGCTCTGCCTGCCGGCGCTGCGTCGCGGGCTTTGGAGCGGCGCAGGGCAACGAGCCGATCGCTGA

Protein sequence : 
MSTNLSVIKNPRVQSDQRRLVRRPDVKPNRPLIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHYGILLALYALV
QFACAPVLGALSDRFGRRPILLVSLAGATVDYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIADITDGDERARHFGF
MSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLASFRWARGMTVVAAL
MAVFFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALMLGMIADGTGYILLA
FATRGWMAFPIMVLLASGGIGMPALQTMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAIYAASITTWNGWAWIAGA
ALYLLCLPALRRGLWSGAGQRADR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tetA(A) ACK44537.1 TetA(A) Not tested SGI1 Protein 5e-161 99
tetA(A) AGK07027.1 TetA(A) Not tested SGI1 Protein 5e-161 99
tetA(A) AGK07085.1 TetA(A) Not tested SGI1 Protein 5e-161 99
tetA CAJ77066.1 Tetracycline resistance protein Not tested AbaR1 Protein 2e-173 99
tetA YP_006098396.1 tetracycline resistance protein Not tested Tn2411 Protein 7e-161 99
tetA(A) ACN81011.1 TetA(A) Not tested AbaR5 Protein 2e-173 99
tet(G) AAK02051.1 tetracycline resistance protein Not tested SGI1 Protein 2e-100 62
tetA(G) ABZ01843.1 TetA(G) Not tested SGI2 Protein 2e-100 62
tetA(G) AGK06974.1 TetA(G) Not tested SGI1 Protein 2e-100 62
tetA(G) AGK07104.1 TetA(G) Not tested SGI1 Protein 2e-100 62
tetA CAJ77034.1 Tetracycline resistance protein Not tested AbaR1 Protein 4e-103 62
tetA(B) AAL08445.1 tetracycline resistance protein TetA(B) Not tested SRL Protein 2e-74 48
tetB AEA34667.1 tetracycline resistance determinant Not tested Not named Protein 2e-74 48
tetA(B) AEZ06045.1 tetracycline efflux protein Not tested Tn6167 Protein 3e-74 48
tetA YP_005797160.1 tetracycline resistance protein, class G (TETA(G)) Not tested AbaR4e Protein 9e-74 48
BJAB07104_00277 YP_008207742.1 Permeases of the major facilitator superfamily Not tested AbaR25 Protein 5e-74 48
BJAB0868_00281 YP_008211607.1 Permeases of the major facilitator superfamily Not tested AbaR26 Protein 5e-74 48
tetA(B) AEQ20905.1 tetracycline resistance protein Not tested Tn6166 Protein 5e-74 48
tet(H) YP_005176248.1 tetracycline efflux protein, class H Not tested ICEPmu1 Protein 6e-68 47
ABZJ_00260 YP_005524216.1 Tetracycline resistance protein, class B (TETA(B) ) (Metal-tetracycline/H(+) antiporter) Not tested AbaR22 Protein 7e-75 46
tetA(B) AFH57202.1 tetracycline resistance protein Not tested AbaR4a Protein 8e-75 46

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
B479_26854 YP_007232163.1 tetracycline efflux protein NC_011586.7045189.p0 Protein 6e-151 99
B479_26854 YP_007232163.1 tetracycline efflux protein NC_010410.6002597.p0 Protein 1e-173 99
B479_26854 YP_007232163.1 tetracycline efflux protein X75761.gene.p01 Protein 4e-161 99
B479_26854 YP_007232163.1 tetracycline efflux protein CP001485.1.gene2821. Protein 1e-173 99
B479_26854 YP_007232163.1 tetracycline efflux protein AF534183.gene.p01 Protein 3e-170 98
B479_26854 YP_007232163.1 tetracycline efflux protein Y19114.gene.p01 Protein 3e-127 79
B479_26854 YP_007232163.1 tetracycline efflux protein AF133139.gene.p01 Protein 3e-105 62
B479_26854 YP_007232163.1 tetracycline efflux protein NC_010410.6002612.p0 Protein 3e-103 62
B479_26854 YP_007232163.1 tetracycline efflux protein AF133140.gene.p01 Protein 3e-103 62
B479_26854 YP_007232163.1 tetracycline efflux protein AF070999.gene.p01 Protein 4e-88 54
B479_26854 YP_007232163.1 tetracycline efflux protein AY264780.2.gene3.p01 Protein 1e-80 53
B479_26854 YP_007232163.1 tetracycline efflux protein Y19116.gene.p01 Protein 2e-77 53
B479_26854 YP_007232163.1 tetracycline efflux protein L06940.gene.p01 Protein 3e-79 53
B479_26854 YP_007232163.1 tetracycline efflux protein AY743590.gene.p01 Protein 2e-72 50
B479_26854 YP_007232163.1 tetracycline efflux protein AF121000.gene.p01 Protein 1e-69 48
B479_26854 YP_007232163.1 tetracycline efflux protein AJ420072.gene.p01 Protein 1e-67 48
B479_26854 YP_007232163.1 tetracycline efflux protein L06798.gene.p01 Protein 4e-68 48
B479_26854 YP_007232163.1 tetracycline efflux protein CP004022.1.gene2534. Protein 3e-69 48
B479_26854 YP_007232163.1 tetracycline efflux protein AF038993.gene.p01 Protein 1e-69 48
B479_26854 YP_007232163.1 tetracycline efflux protein NC_010558.1.6275971. Protein 1e-74 48
B479_26854 YP_007232163.1 tetracycline efflux protein V00611.gene.p01 Protein 4e-74 48
B479_26854 YP_007232163.1 tetracycline efflux protein Y15510.gene.p01 Protein 1e-68 47
B479_26854 YP_007232163.1 tetracycline efflux protein AB084246.gene.p01 Protein 2e-74 47
B479_26854 YP_007232163.1 tetracycline efflux protein AF090987.gene.p01 Protein 6e-64 47
B479_26854 YP_007232163.1 tetracycline efflux protein NC_011595.7059241.p0 Protein 7e-54 43
B479_26854 YP_007232163.1 tetracycline efflux protein NC_011586.7043399.p0 Protein 5e-54 43
B479_26854 YP_007232163.1 tetracycline efflux protein NC_010410.6003291.p0 Protein 7e-54 43
B479_26854 YP_007232163.1 tetracycline efflux protein AJ250203.gene.p01 Protein 7e-63 42
B479_26854 YP_007232163.1 tetracycline efflux protein NC_009085.4918440.p0 Protein 1e-47 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
B479_26854 YP_007232163.1 tetracycline efflux protein VFG1036 Protein 1e-74 48