Gene Information

Name : B479_23190 (B479_23190)
Accession : YP_007231470.1
Strain : Pseudomonas putida PC9
Genome accession: NC_019905
Putative virulence/resistance : Virulence
Product : phage transcriptional regulator, AlpA
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 5115816 - 5116019 bp
Length : 204 bp
Strand : -
Note : COG3311 Predicted transcriptional regulator

DNA sequence : 
GTGTACGAATCTGAGGAGCTGGTCATGCGTGTAATTCGATTGAAAACGGTTGTTGAAATAACAGGTCTGGCACGGTCGAC
GGTGTATAGCTACATCGCTAAAGGGATATTTCCGAAGTCTATTTCGCTGGGCGGTCGATGTGTCGGATGGGTGGAGTCTG
AGGTTCATACCTGGATTCAGGCTAGGGTAACAGAGCGCAATTAG

Protein sequence : 
MYESEELVMRVIRLKTVVEITGLARSTVYSYIAKGIFPKSISLGGRCVGWVESEVHTWIQARVTERN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC0497 NP_230151.1 transcriptional regulator Not tested VSP-2 Protein 3e-13 52
VPI2_0041 ACA01856.1 predicted transcriptional regulator Not tested VPI-2 Protein 7e-13 49
VC1809 NP_231443.1 transcriptional regulator Not tested VPI-2 Protein 1e-12 49
VC0395_A1406 YP_001217349.1 transcriptional regulator Not tested VPI-2 Protein 1e-12 49
PMI2608 YP_002152324.1 prophage regulatory protein Not tested Not named Protein 1e-08 45
VC1785 NP_231420.1 transcriptional regulator Not tested VPI-2 Protein 5e-10 44
VC0395_A1382 YP_001217325.1 transcriptional regulator Not tested VPI-2 Protein 5e-10 44
VPI2_0033 AAX20900.1 transcriptional regulator Not tested VPI-2 Protein 4e-10 44
unnamed CAA21398.1 - Not tested HPI Protein 3e-10 43
unnamed CAB46594.1 DNA-binding protein Not tested HPI Protein 2e-10 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
B479_23190 YP_007231470.1 phage transcriptional regulator, AlpA VFG1141 Protein 3e-13 49
B479_23190 YP_007231470.1 phage transcriptional regulator, AlpA VFG1118 Protein 1e-10 44