Gene Information

Name : B479_23075 (B479_23075)
Accession : YP_007231447.1
Strain : Pseudomonas putida PC9
Genome accession: NC_019905
Putative virulence/resistance : Virulence
Product : DNA repair protein RadC
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 5087904 - 5088401 bp
Length : 498 bp
Strand : +
Note : COG2003 DNA repair proteins

DNA sequence : 
ATGAAATATCACAAGCTCAAAGCCGGTGAAGCGAGTGGCACCTACGTCATGGAGTCCCCCGTCACCGAGGCCGACATCCT
GCAGATGGCGCAACAACTGGCCATGAGTCGTCTTTCTAAAGGCCGGGCACTGACTGAGCCGAAGCAGGTGTTCAGTCACC
TGCAAACACTGCTGCAGTACCACGAGTATGAAGTCTTTGCCCTGCTGCTGCTCGATTCCAAACATCGGGTCATAGGCTTT
AGAGAACTGTTCAGAGGCACTCTGGATGGCGCGAGCGTGTACCCGAGAGAGGTGGTCAAGATCGCCTTGGAGCACAATGC
TGCGGCCGTCATTATGGTTCACAATCATCCCTCCGGTGACCCAGAACCCAGCCAAGCCGATCGGACCCTGACCGCCACCC
TCAAAAACGCTCTGAACATGGTCGGCACCTGCATATTGGATCATGTGGTGGTTGGCCATGAAGGTTGCGTCTCATTGGCT
GAACGAGGTTATTTGTAA

Protein sequence : 
MKYHKLKAGEASGTYVMESPVTEADILQMAQQLAMSRLSKGRALTEPKQVFSHLQTLLQYHEYEVFALLLLDSKHRVIGF
RELFRGTLDGASVYPREVVKIALEHNAAAVIMVHNHPSGDPEPSQADRTLTATLKNALNMVGTCILDHVVVGHEGCVSLA
ERGYL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC0510 NP_230161.1 DNA repair protein RadC-like protein Not tested VSP-2 Protein 3e-31 52
VC1786 NP_231421.1 DNA repair protein RadC Not tested VPI-2 Protein 1e-29 52
VC0395_A1383 YP_001217326.1 DNA repair protein RadC Not tested VPI-2 Protein 1e-29 52
VPI2_0034 ACA01849.1 DNA repair protein RadC Not tested VPI-2 Protein 9e-30 52
radC AAN62140.1 putative DNA repair protein RadC Not tested PAGI-2(C) Protein 1e-21 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
B479_23075 YP_007231447.1 DNA repair protein RadC VFG1119 Protein 4e-30 52