Gene Information

Name : B479_23050 (B479_23050)
Accession : YP_007231442.1
Strain : Pseudomonas putida PC9
Genome accession: NC_019905
Putative virulence/resistance : Unknown
Product : integrase family protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 5082815 - 5084071 bp
Length : 1257 bp
Strand : +
Note : COG0582 Integrase

DNA sequence : 
ATGTGCGCACAAGCTACCCGCCTCTCTGAACTCAAAGTCAAATCTGCCAAGCCTGCTGAAAAGGACTACGTCCTATTTGA
TGGCGGCGGACTTCAAATGCGAGTGAGAAGCAATGGATCTAAGCTGTGGAACTTCAACTATCGACACCCTGTGACGAAGA
AGCGGATCAACATGGGACTGGGAACCTTCCCCGAAGTCTCGTTAGCGCAAGCACGCAAGGGTTCCGTTGAAGCGAGGGAA
GCCCTTGCCCACGGCATCGATCCTAAAGAGAAACGGGACGCTGTGCTGCAAGCTAAACAAGCTGCGACTGAGCACACATT
CCAGAATGTGGCGACGTCCTGGTATGAACTGAAGAAGGATGCTGTGACGCCGGCCTACGCTGAGGACATCTGGCGCTCGC
TAACATTGCACATATTCCCGGACTTGGGCGCCACACCGATCTCAGCCATCAGCGCACCTCAAGTCATCAACCTACTCCGG
CCACTCGAAACCAAGGGCAGCCTTGAAACCGTGAAGCGGCTGACGCAGCGGCTCAACGAGATCATGACCTACGGGGTCAA
CTCTGGACTGATTCACGCGAACCCGCTCAGCGGTATCCGCTCCGTCTTCAAGAAACCGAAAAAGAAAAACATGGCGGCAC
TACCCCCCGATGAGCTGAAAGAGCTCATGGTGGCAATCGCCAATGCCAGCATAAAAAGAACTACCCGCTGCCTGATTGAG
TGGCAGCTCCACACCATGACCCGGCCAGTCGAGGCAGCAACCACCCGCTGGGCAGATATCGACATCGAGAAGAAGATCTG
GACGATTCCTGCGGAGCGCATGAAGAAGCGCCGCGCGCACATTGTCCCACTCACCGACCAGGCTCTTGCGCTCCTAGAAG
CAATCAAGCCTTACAGTGGACATCGGGAATTTGTGTTTCCCGCAGACCGAAACCCTCGTACCCACTGCAATAGCCAAACC
GCCAACATGGCGCTAAAGCGCATGGGCTTCGCAGGGCGCTTGGTAAGCCATGGGATGCGCTCTATGGCGAGCACCATCCT
CAACGAGCACGGCTGGGATCCTGAATTGATCGAGGTTGCGCTTGCACACGTCGATAAAGACGAGGTACGTAGCGCGTACA
ACCGAGCAGATTACATAGAACGCAGACGCCCTCTGATGGCGTGGTGGAGCGACCACATTCAGGAAGCTGCTACAGGCAAC
CTGTCGGTGTCAGCCATCAGAGAAAATCAAGATAAAAAAGTCGTCTCGATACGTTGA

Protein sequence : 
MCAQATRLSELKVKSAKPAEKDYVLFDGGGLQMRVRSNGSKLWNFNYRHPVTKKRINMGLGTFPEVSLAQARKGSVEARE
ALAHGIDPKEKRDAVLQAKQAATEHTFQNVATSWYELKKDAVTPAYAEDIWRSLTLHIFPDLGATPISAISAPQVINLLR
PLETKGSLETVKRLTQRLNEIMTYGVNSGLIHANPLSGIRSVFKKPKKKNMAALPPDELKELMVAIANASIKRTTRCLIE
WQLHTMTRPVEAATTRWADIDIEKKIWTIPAERMKKRRAHIVPLTDQALALLEAIKPYSGHREFVFPADRNPRTHCNSQT
ANMALKRMGFAGRLVSHGMRSMASTILNEHGWDPELIEVALAHVDKDEVRSAYNRADYIERRRPLMAWWSDHIQEAATGN
LSVSAIRENQDKKVVSIR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC0847 NP_230494.1 phage family integrase Not tested VPI-1 Protein 5e-139 63
VC0395_A0372 YP_001216328.1 phage family integrase Not tested VPI-1 Protein 5e-139 63
int AAK20773.1 integrase Not tested VPI Protein 4e-139 63
int AAK20803.1 integrase Not tested VPI Protein 4e-139 63
unnamed AAA82714.1 integrase Not tested VPI Protein 4e-139 63
VC0516 NP_230167.1 phage integrase Not tested VSP-2 Protein 4e-113 54
VPI2_0001 ACA01818.1 phage family integrase Not tested VPI-2 Protein 8e-105 51
VC1758 NP_231394.1 phage family integrase Not tested VPI-2 Protein 3e-104 51
VC0395_A1357 YP_001217300.1 phage family integrase Not tested VPI-2 Protein 3e-104 51

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
B479_23050 YP_007231442.1 integrase family protein VFG1092 Protein 1e-104 51