Gene Information

Name : B479_21780 (B479_21780)
Accession : YP_007231188.1
Strain : Pseudomonas putida PC9
Genome accession: NC_019905
Putative virulence/resistance : Virulence
Product : ColR
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4796154 - 4796837 bp
Length : 684 bp
Strand : -
Note : COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

DNA sequence : 
ATGCGCATTCTTTTGGTTGAAGACAACCGCGATATCCTGGCCAACCTGGCCGATTACCTGGGCATGAAAGGCTATACCGT
CGACTGTGCCCAGGATGGCCTGTCCGGCCTGCACCTGGCTGCCACCGAGCACTACGACCTGATCGTGCTCGACATCATGT
TGCCGGGCATCGACGGCTACACCCTGTGCAAGCGCCTGCGCGAAGACGCCCGCCGCGACACGCCGGTGATCATGCTCACC
GCCCGCGACCAATTGGACGACCGCCTGCAAGGCTTCCGCTCCGGTGCCGACGACTACCTGCTCAAGCCCTTCGCCCTGTC
GGAGCTGGCCGCCCGCATCGAAGCGGTGCTGCGCCGGGCCCAGGGCGGTGGGCGCCGCACCTTGCAGGTGGCCGACCTCA
GTTATGACCTGGACACCCTCGAGGTCACCCGCCAGGGCCGCTTGCTCAAGCTCAACCCGGTCGGCCTCAAGCTGTTGGCG
GTGCTGATGCAGAAAAGCCCGCACGTATTGCGTCGCGAAGTGCTGGAAGAAGCCCTGTGGGGAGATGATTGCCCTGACAG
CGACAGCCTGCGCAGCCACGTGCACCAGCTGCGCCAGGTGATCGACAAGCCGTTTGAAAAACCGCTGCTGCATACCGTCC
ATGGCGTCGGCTATCGCCTCGCCGAGGGCCGTGATGGAGTTTAA

Protein sequence : 
MRILLVEDNRDILANLADYLGMKGYTVDCAQDGLSGLHLAATEHYDLIVLDIMLPGIDGYTLCKRLREDARRDTPVIMLT
ARDQLDDRLQGFRSGADDYLLKPFALSELAARIEAVLRRAQGGGRRTLQVADLSYDLDTLEVTRQGRLLKLNPVGLKLLA
VLMQKSPHVLRREVLEEALWGDDCPDSDSLRSHVHQLRQVIDKPFEKPLLHTVHGVGYRLAEGRDGV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 3e-33 42
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 3e-32 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
B479_21780 YP_007231188.1 ColR BAC0197 Protein 2e-35 43
B479_21780 YP_007231188.1 ColR BAC0125 Protein 3e-34 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
B479_21780 YP_007231188.1 ColR VFG0596 Protein 1e-33 42
B479_21780 YP_007231188.1 ColR VFG1390 Protein 3e-31 41