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Name : B479_17615 (B479_17615) Accession : YP_007230358.1 Strain : Pseudomonas putida PC9 Genome accession: NC_019905 Putative virulence/resistance : Virulence Product : lysine decarboxylase Function : - COG functional category : - COG ID : - EC number : - Position : 3867108 - 3869357 bp Length : 2250 bp Strand : - Note : COG1982 Arginine/lysine/ornithine decarboxylases DNA sequence : ATGTACAAGGACCTCAAGTTCCCCATCCTCATCGTGCACCGCGCCATCAAGGTTGACAGCGTCGCTGGCGAGCGTGTGCG GGGCATCGCCGAGGAACTGCGCCAGGACGGCTTTGCCGTCCTCGCCGCCGCCGACCATGCCGAGGCCTGCCTGGTCGCTG CCACCCACCATGGCCTGGCCTGCATGCTGATTGCCGCCGAGGGCGTCGGCGAGAATACCCACCTGCTGCAGAACATGGCC GAGCTGATCCGCCTGGCCCGCCTGCGCGCCCCCAGCCTGCCGATTTTCGCCCTGGGCGAACAAGTAACCCTGGAAAACGC CCCCGCCGAAGCCATGAGCGAGCTCAACCAGTTGCGGGGCATCCTCTACCTGTTCGAAGACACCGTGCCGTTTCTTGCGC GCCAGGTGGCGCGTGCCGCACATATCTACCTGGACGGCCTGCTGCCGCCGTTCTTCAAGGCCCTGGTGCAGCACACCGCG CAGTCCAATTATTCCTGGCACACCCCGGGCCACGGCGGCGGCGTGGCCTATCGCAAAAGCCCAGTGGGCCAGGCCTTTCA CCAGTTCTTCGGGGAAAACACCCTACGCTCGGACCTGTCCGTTTCCGTGCCGGAGCTGGGCTCGCTGCTCGATCACACCG GCCCCTTGGCCGAAGCCGAAGCCAGGGCTGCGCGCAACTTTGGCGCCGACCACACCTTTTTCGTCATCAACGGCACCTCC ACGGCCAACAAGATCGTCTGGCACGCCATGGTCGGCCGCGACGACCTGGTGCTGGTGGACCGCAACTGCCACAAGTCGGT GGTGCATGCGATCATCATGACCGGTGCCATTCCCCTCTATCTGTGCCCCGAGCGCAACGAACTCGGGATCATCGGCCCGA TCCCGCTCAGCGAGTTCAGCCCCGAGGCGATCCAGGCGAAGATCCAGGCCAACCCTCTTGCTCGCGATCGCGGGCAGCGC ATCAAGCTGGCGGTGGTGACCAACTCCACCTACGACGGCCTGTGCTACCACGCCGGGCTGATCAAGCAGACCCTGGGCGC CAGTGTCGAGGTGCTGCACTTCGACGAGGCCTGGTTCGCCTATGCGGCATTCCACGAGTTCTTTACCGGGCGCTATGCCA TGGGCACGGCCTGCGCGGCAGACAGCCCGCTGGTGTTCAGCACCCATTCCACCCACAAGCTGCTGGCCGCGTTCAGCCAG GCCTCGATGATTCATGTGCAGGACGGGGCCAGGCGCCAGCTGGACCGTGACCGCTTCAACGAAGCGTTCATGATGCACAT CTCGACCTCGCCGCAGTACAGCATCCTCGCTTCGCTGGACGTGGCCTCGACCATGATGGAAGGGCCGGCCGGGCGTTCGC TGCTGCAAGAAATGTTCGACGAGGCGCTGAGCTTTCGCCGTGCCCTGGCCAACCTGCGCGAGCACATCGCCGCCGACGAC TGGTGGTTCAGCATCTGGCAGCCGCCGAGCGCCGAAGGCATCCACCGCCTGGCCGCGCAGGACTGGCTGCTGCAGCCGGG GGCGGAGTGGCATGGCTTTGGCGAAGTGGCGGATGACTATGTGCTGCTCGACCCGCTGAAGGTGACCCTTGTGATGCCGG GCCTGAGCGCGGGCGGTGCACTGGGCGAGCATGGCATCCCGGCGGCAGTGGTCAGCAAGTTTCTCTGGGAGCGGGGGCTG GTGGTGGAGAAAACCGGCCTGTACAGCTTCCTGGTGCTGTTCTCCATGGGCATCACCAAGGGCAAGTGGAGCACCCTGCT CACCGAGTTGCTGGAGTTCAAGCGCCACTATGACGGCAATACCGCCCTGAGCAACTGCCTGCCGAGCGTGGTGGCTGCCG ATGCCTCGCGCTATCAGGGCATGGGCCTGCGCGACCTGTGCGACCAGTTGCATGGCTGCTACCGCGCCAATGCCACGGCC AAGCAACTGAAACGGTTGTTCACGCGCTTGCCGGAGGTAGCCGTGAGCCCGGCCCGGGCCTATGACCAGATGGTGCGCGG TGAGGTGGAGGCGGTGCCGATCGAGGCGCTGCTGGGGCGGGTGGCAGCGGTGATGCTGGTGCCGTACCCGCCTGGTATTC CGTTGATCATGCCGGGGGAGCGGTTTACCGAGGCGACCCGCTCGATAGTCGATTACCTGGCCTTCGCCCGGGCGTTCAAC CAGGGCTTCCCAGGTTTCGTCGCCGACGTGCACGGCCTGCAGAATGAAAGCGGCCGCTACACGGTGGACTGCATCAAGGA ATGCGAATGA Protein sequence : MYKDLKFPILIVHRAIKVDSVAGERVRGIAEELRQDGFAVLAAADHAEACLVAATHHGLACMLIAAEGVGENTHLLQNMA ELIRLARLRAPSLPIFALGEQVTLENAPAEAMSELNQLRGILYLFEDTVPFLARQVARAAHIYLDGLLPPFFKALVQHTA QSNYSWHTPGHGGGVAYRKSPVGQAFHQFFGENTLRSDLSVSVPELGSLLDHTGPLAEAEARAARNFGADHTFFVINGTS TANKIVWHAMVGRDDLVLVDRNCHKSVVHAIIMTGAIPLYLCPERNELGIIGPIPLSEFSPEAIQAKIQANPLARDRGQR IKLAVVTNSTYDGLCYHAGLIKQTLGASVEVLHFDEAWFAYAAFHEFFTGRYAMGTACAADSPLVFSTHSTHKLLAAFSQ ASMIHVQDGARRQLDRDRFNEAFMMHISTSPQYSILASLDVASTMMEGPAGRSLLQEMFDEALSFRRALANLREHIAADD WWFSIWQPPSAEGIHRLAAQDWLLQPGAEWHGFGEVADDYVLLDPLKVTLVMPGLSAGGALGEHGIPAAVVSKFLWERGL VVEKTGLYSFLVLFSMGITKGKWSTLLTELLEFKRHYDGNTALSNCLPSVVAADASRYQGMGLRDLCDQLHGCYRANATA KQLKRLFTRLPEVAVSPARAYDQMVRGEVEAVPIEALLGRVAAVMLVPYPPGIPLIMPGERFTEATRSIVDYLAFARAFN QGFPGFVADVHGLQNESGRYTVDCIKECE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66195.1 | putative cadaverin decarboxylase | Virulence | PAI III 536 | Protein | 7e-128 | 42 |
| cadA | NP_756988.1 | lysine decarboxylase, inducible | Not tested | PAI II CFT073 | Protein | 4e-125 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| B479_17615 | YP_007230358.1 | lysine decarboxylase | VFG1670 | Protein | 4e-128 | 42 |
