Gene Information

Name : B479_15600 (B479_15600)
Accession : YP_007229957.1
Strain : Pseudomonas putida PC9
Genome accession: NC_019905
Putative virulence/resistance : Virulence
Product : aldehyde dehydrogenase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3457866 - 3459347 bp
Length : 1482 bp
Strand : +
Note : COG1012 NAD-dependent aldehyde dehydrogenases

DNA sequence :
ATGACCCTCGTTCGTTTCCAGATGTGCATCGACGGCCAATGGCGCGATGCCCAGAGCGGCAAGACCTTCGACAGCCTCAA
CCCGGCTACCGCCCAGGCATGGGCGCAATTGCCCGACGCCGACGAGGCCGATGTCGAGCTGGCCGTGCAGGCCGCCCAGC
GCGCCTTCGACAGCAAGGAGTGGCGCAGCATCACCGCCACCGCGCGCGGCAAGCTGCTGCGTCGCCTGGGTGACCTGATT
GCCGAAAACAAGGAACACCTGGCCCAGCTGGAAAGCCGTGACAACGGCAAGCTGATCCGCGAAACCCGCGGCCAGGTCGG
CTACCTGCCAGAGTTCTTTCACTACACCGCAGGCCTTGCCGACAAGCTTGAAGGCGGCACCCTGCCGCTGGACAAGCCCG
ACCTGTTCGCCTACACCGTGCACGAGCCGATCGGCGTGGTGGCCGGGATCATCCCGTGGAACAGCCCGCTGTACCTCACC
GCCATCAAGCTGGCCCCGGCCCTGGCCGCCGGCAACACCATCGTGCTCAAGCCGTCCGAGCACGCCTCGGCGACCATCCT
CGAGCTGGCCCGCCTGGCCCTCGAGGCCGGCTTCCCGGCTGGTGTGGTCAACGTGGTCACCGGCTACGGCCCCAGCACCG
GCGCGGCGCTGACCCGCCACCCGCTGGTGCGCAAGATCGCCTTCACCGGCGGCGCCGCCACCGCCCGCCACGTGGTGCGC
AGCAGCGCCGAGAACTTCGCCAAGCTGTCGCTGGAGCTGGGCGGCAAGTCGCCGAACATCATTTTCGCCGATGCCGACCT
GGACAGCGCCATCAACGGCGCCGTGGCAGGCATTTATGCCGCCTCCGGGCAAAGCTGCGTGGCTGGCTCGCGTCTGCTGG
TGCAGGACGAGATCTTCGACGAGTTCGTCGAACGCCTGATCGCCCGCGCCAAGCGCATCCGCATCGGCAACCCGCAGGAC
GACGCCAGCGAAATGGGCCCCATGGCCACCGCGCAACAGCTGGCCGTGGTCGAAGGCCTGGTGGCCGCGGCCAAGGCCGA
AGGCGCCAAGCTGCACATGGGCGGCAAGCGCGCCGAAGTCGAGGGTGACGGCTGGTTCTACGAGCCAACCCTGTTCGAAT
GCGACAGCAACTCGATGACCATCATGCAGGAAGAGGTGTTCGGCCCGGTTGCCGCGGTAATCCGCTTCAAGACCGAGGAA
GAGGCCCTGGCCATCGCCAACGACTCGCAGTTCGGCCTGGCCGCCGGCATCTGGACCCGCGACCTGGGCCGTGCCCACCG
CCTGGCCCGCGACGTGCGTTCGGGGATTATCTGGGTCAACACCTACCGTGCCGTGTCGGCCATGGCGCCGATCGGCGGGT
TCAAGAACAGCGGCTACGGCCGTGAGAGCGGCATCGATTCGGTGCTGGCCTATACCGAGCTGAAGACGGTGTGGATCAAC
CTGTCCACCGCGCCGATGCCCGACCCGTTTGTGATGCGCTAA

Protein sequence :
MTLVRFQMCIDGQWRDAQSGKTFDSLNPATAQAWAQLPDADEADVELAVQAAQRAFDSKEWRSITATARGKLLRRLGDLI
AENKEHLAQLESRDNGKLIRETRGQVGYLPEFFHYTAGLADKLEGGTLPLDKPDLFAYTVHEPIGVVAGIIPWNSPLYLT
AIKLAPALAAGNTIVLKPSEHASATILELARLALEAGFPAGVVNVVTGYGPSTGAALTRHPLVRKIAFTGGAATARHVVR
SSAENFAKLSLELGGKSPNIIFADADLDSAINGAVAGIYAASGQSCVAGSRLLVQDEIFDEFVERLIARAKRIRIGNPQD
DASEMGPMATAQQLAVVEGLVAAAKAEGAKLHMGGKRAEVEGDGWFYEPTLFECDSNSMTIMQEEVFGPVAAVIRFKTEE
EALAIANDSQFGLAAGIWTRDLGRAHRLARDVRSGIIWVNTYRAVSAMAPIGGFKNSGYGRESGIDSVLAYTELKTVWIN
LSTAPMPDPFVMR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
orf17 AAO17183.1 Orf17 Not tested tcd island Protein 3e-75 42
ORF SG19 AAN62241.1 putative aldehyde dehydrogenase Not tested PAGI-3(SG) Protein 2e-78 42
VC0819 NP_230467.2 aldehyde dehydrogenase Not tested VPI-1 Protein 4e-80 41
unnamed AAK01506.1 putative aldehyde dehydrogenase Not tested PAGI-1 Protein 1e-72 41
aldA AAC12273.1 aldehyde dehydrogenase Virulence VPI Protein 3e-83 41
aldA AAK20747.1 aldehyde dehydrogenase Virulence VPI Protein 3e-83 41
aldA AAK20776.1 aldehyde dehydrogenase Virulence VPI Protein 3e-83 41
aldA-1 YP_001216300.1 aldehyde dehydrogenase Not tested VPI-1 Protein 4e-83 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
B479_15600 YP_007229957.1 aldehyde dehydrogenase VFG0082 Protein 2e-80 41