Gene Information

Name : B479_11035 (B479_11035)
Accession : YP_007229048.1
Strain : Pseudomonas putida PC9
Genome accession: NC_019905
Putative virulence/resistance : Virulence
Product : two component transcriptional regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2429754 - 2430416 bp
Length : 663 bp
Strand : +
Note : COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

DNA sequence : 
ATGCGCCTGCTGCTGGTAGAAGATGACGTCGCGTTGGGGGAGGGGATTTGTGACGGCATGCGCCGCGAGGGCTATACCCT
CGACTGGTTGCAGGATGGCGCCAGTGCCTTGCATGCCCTGTGCCACGAAGAGTTCGACCTGGCCATCCTCGACCTGGGCT
TGCCGCGCCTGGATGGCATCGAGTTGCTGCGGCGCCTGCGTGCGGCCGGGAAGAGCCTGCCAGTGCTGGTGCTGACCGCC
CGCGACGCCACCGATGACCGCATTGCCGGGCTGGATGCCGGCGCCGACGACTACCTGGTCAAACCCTTCGACCTCAACGA
ACTCAAGGCCCGCTTGCGGGCCTTGCTGCGGCGCAGTAGTGGCCGCGCCCGCGTGCTGATAGAGCATGCCGGGGTATGCC
TGGATCCGGTCAGCCAGCAGGTGCACTACCTGGGCCAGCCGGTGGTACTCACGCCCAAGGAATACCTGCTGCTGCACGAG
CTGCTGGCCCAGCCGGGCAAGGTGTTCACCCGCGAACGCTTGACCCAGTTGCTGTATGGCTGGGATGAAGAGCCGGAGAG
CAACACCCTGGAAGTGAACATCTACCACCTGCGCAAGAAGCTGTTCAACGGCCTGATCCGCACCGTGCGCGGGATCGGCT
ACCTGGTGGAACGCAAGTCATGA

Protein sequence : 
MRLLLVEDDVALGEGICDGMRREGYTLDWLQDGASALHALCHEEFDLAILDLGLPRLDGIELLRRLRAAGKSLPVLVLTA
RDATDDRIAGLDAGADDYLVKPFDLNELKARLRALLRRSSGRARVLIEHAGVCLDPVSQQVHYLGQPVVLTPKEYLLLHE
LLAQPGKVFTRERLTQLLYGWDEEPESNTLEVNIYHLRKKLFNGLIRTVRGIGYLVERKS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 5e-31 45
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 2e-25 44
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 8e-25 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
B479_11035 YP_007229048.1 two component transcriptional regulator BAC0487 Protein 5e-32 48
B479_11035 YP_007229048.1 two component transcriptional regulator NC_002516.2.879194.p Protein 2e-28 45
B479_11035 YP_007229048.1 two component transcriptional regulator CP000647.1.gene1136. Protein 2e-20 42
B479_11035 YP_007229048.1 two component transcriptional regulator BAC0197 Protein 7e-27 42
B479_11035 YP_007229048.1 two component transcriptional regulator BAC0530 Protein 2e-20 42
B479_11035 YP_007229048.1 two component transcriptional regulator CP001918.1.gene2526. Protein 1e-19 41
B479_11035 YP_007229048.1 two component transcriptional regulator BAC0288 Protein 9e-25 41
B479_11035 YP_007229048.1 two component transcriptional regulator BAC0308 Protein 5e-26 41
B479_11035 YP_007229048.1 two component transcriptional regulator Y16952.3.orf35.gene. Protein 1e-24 41
B479_11035 YP_007229048.1 two component transcriptional regulator U82965.2.orf14.gene. Protein 2e-24 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
B479_11035 YP_007229048.1 two component transcriptional regulator VFG0473 Protein 2e-34 48
B479_11035 YP_007229048.1 two component transcriptional regulator VFG0596 Protein 8e-26 44