Gene Information

Name : B479_08415 (B479_08415)
Accession : YP_007228538.1
Strain : Pseudomonas putida PC9
Genome accession: NC_019905
Putative virulence/resistance : Virulence
Product : two component heavy metal response transcriptional regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1891350 - 1892030 bp
Length : 681 bp
Strand : -
Note : COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

DNA sequence : 
ATGAAACTGCTGATCGTCGAAGACCAGGCCCGGACCGGCCAGTACCTGAGCCAGGGCCTGAACGAGGCCGGCTTCGCCAC
CGAACTGGCCACCGACGGCGAGACCGGCCAGTTCCTCGCCCTGACCGGTGACCACGACCTGCTGATTCTCGACGTGATGC
TGCCCGGCCGTGACGGCTGGCAGATCCTCCAGGCCGTGCGCCAGGCCGGCCTGGACACCCCGGTGCTGTTTCTCACCGCC
CGCGATGCCGTGGAGGACCGGGTGCACGGCCTGGAGCTGGGCGCCGATGATTACCTGGTCAAGCCGTTTGCCTTCTCCGA
ACTGCTGGCGCGGGTGCGCAGCCTGCTGCGCCGGGGCACCAGCCCCAGCCAGGACACCACCCTGGGGCTGGCCGACCTGC
GCCTGGACCTGATCCGCCGCCGCGCCGAGCGCGCCGGCCAGCGCATCGACCTGACCGCCAAGGAGTTCGCCCTGCTTGAA
CTGCTGCTGCGCCGCCAGGGCGAGGTGCTGCCCAAATCGCTGATCGCCTCGCAGGTGTGGGACATGAATTTCGACAGCGA
TACCAATGTGATCGAAGTGGCGATCCGCCGCCTGCGCCTGAAGATCGACGACCCGCACCCCAACAAGCTGATCCATACCG
TACGCGGCATGGGCTATGTACTCGAAGAGCGCGCGGAGTGA

Protein sequence : 
MKLLIVEDQARTGQYLSQGLNEAGFATELATDGETGQFLALTGDHDLLILDVMLPGRDGWQILQAVRQAGLDTPVLFLTA
RDAVEDRVHGLELGADDYLVKPFAFSELLARVRSLLRRGTSPSQDTTLGLADLRLDLIRRRAERAGQRIDLTAKEFALLE
LLLRRQGEVLPKSLIASQVWDMNFDSDTNVIEVAIRRLRLKIDDPHPNKLIHTVRGMGYVLEERAE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 1e-49 55
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 1e-48 53

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
B479_08415 YP_007228538.1 two component heavy metal response transcriptional regulator BAC0638 Protein 3e-57 70
B479_08415 YP_007228538.1 two component heavy metal response transcriptional regulator BAC0083 Protein 2e-63 69
B479_08415 YP_007228538.1 two component heavy metal response transcriptional regulator BAC0197 Protein 7e-59 66
B479_08415 YP_007228538.1 two component heavy metal response transcriptional regulator BAC0111 Protein 1e-61 63
B479_08415 YP_007228538.1 two component heavy metal response transcriptional regulator BAC0308 Protein 2e-59 62
B479_08415 YP_007228538.1 two component heavy metal response transcriptional regulator BAC0125 Protein 2e-57 60
B479_08415 YP_007228538.1 two component heavy metal response transcriptional regulator BAC0347 Protein 1e-54 59
B479_08415 YP_007228538.1 two component heavy metal response transcriptional regulator NC_002516.2.879194.p Protein 6e-28 41
B479_08415 YP_007228538.1 two component heavy metal response transcriptional regulator HE999704.1.gene1528. Protein 2e-27 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
B479_08415 YP_007228538.1 two component heavy metal response transcriptional regulator VFG0596 Protein 5e-50 55
B479_08415 YP_007228538.1 two component heavy metal response transcriptional regulator VFG1390 Protein 3e-34 44
B479_08415 YP_007228538.1 two component heavy metal response transcriptional regulator VFG1389 Protein 7e-30 43