Gene Information

Name : lolD (B479_08400)
Accession : YP_007228535.1
Strain : Pseudomonas putida PC9
Genome accession: NC_019905
Putative virulence/resistance : Resistance
Product : lipoprotein transporter ATP-binding subunit
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1887781 - 1888479 bp
Length : 699 bp
Strand : +
Note : COG1136 ABC-type antimicrobial peptide transport system, ATPase component

DNA sequence : 
ATGAGTGAGTCGCGCATGAGTGATAAAGCCGTTCTGAGTTGCCGCAACCTGGGCAAGTCCTACGACGAGGGCCCGGAGTC
GGTGCAGGTGCTGTCCGGGCTCAACCTCGAGCTGCACGCCGGTGAGCGGGTAGCCATCGTAGGTAGCTCCGGCTCGGGCA
AGAGTACCTTGCTCAACCTGTTGGGCGGCCTCGACCGGCCGACCCAGGGCAGCGTCTGGCTGGCCGGCGAGGAGCTGTCG
GCACTGGGCGAGCGTGCCCGTGGCCTGTTGCGCAACCGCGAGCTGGGCTTTGTCTACCAGTTCCACCACTTGCTGCCGGA
ATTCACTGCCATCGAAAACGTGTGCATGCCGTTGCTGATCGGCCGCACGCCGATCCCCGAGGCCCGTGAGCGTGCCGAGG
CGCTGCTCAAGCGTGTTGGCCTGGCCCACCGCTTCAACCACAAGCCGGCCGAGTTGTCCGGTGGTGAGCGCCAGCGGGTA
GCGATTGCCCGCGCACTGGTCAACCGCCCCGGCCTGGTAATGCTCGACGAGCCGACCGGCAACCTCGACCACCACACCGC
CCAGGGCATCCAGGAGTTGATGCAGGAACTGTCCAGCGCGTCGCGCACGGCGTTCCTGGTGGTCACCCACGACCTCAACC
TGGCGCGCCAGATGGACCGTGTATTGAAGCTCGACGACGGCCACCTGGTGGCGATCTGA

Protein sequence : 
MSESRMSDKAVLSCRNLGKSYDEGPESVQVLSGLNLELHAGERVAIVGSSGSGKSTLLNLLGGLDRPTQGSVWLAGEELS
ALGERARGLLRNRELGFVYQFHHLLPEFTAIENVCMPLLIGRTPIPEARERAEALLKRVGLAHRFNHKPAELSGGERQRV
AIARALVNRPGLVMLDEPTGNLDHHTAQGIQELMQELSSASRTAFLVVTHDLNLARQMDRVLKLDDGHLVAI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-27 42
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-28 41
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-28 41
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 1e-28 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
lolD YP_007228535.1 lipoprotein transporter ATP-binding subunit NC_012469.1.7686878. Protein 2e-38 45
lolD YP_007228535.1 lipoprotein transporter ATP-binding subunit NC_008702.1.4606598. Protein 4e-36 45