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Name : B479_06985 (B479_06985) Accession : YP_007228256.1 Strain : Pseudomonas putida PC9 Genome accession: NC_019905 Putative virulence/resistance : Virulence Product : polysaccharide biosynthesis protein CapD Function : - COG functional category : - COG ID : - EC number : - Position : 1563286 - 1565283 bp Length : 1998 bp Strand : + Note : COG1086 Predicted nucleoside-diphosphate sugar epimerases DNA sequence : ATGGATAAGGTGCGTACAAAGCTGCTAGCTCTGCCACGGCGGCATAAAAGGCTGTTGCAGGTGATAACTGATATCGTGCT GATATGGGTTGCCTTGTGGCTGGCTTTTGTCGTGCGACTGGGCCTCGACGAGATGGCCAACCCGATCATTGATCACTCAT GGCTCTTCGCGTGCGCGCCCGTGGTTGCGATCCCGCTGTTTATCCGTTTCGGCCTCTATCGCGCCGTAATGCGTTACTTC GGTAACGATGCGCTGATTGCCATCATCAAAGCCGTCACACTTTCAGCTTTGATTCTCGGTTTCATCATCTATTGGGCGAG CAACCATCAGAATGTGGTGCCACGCTCGATTACTTTCAACTACTGGTGGCTTAGCCTGATCCTTGTGGGCGGGCTACGTT TAGCCATGCGACAGTATTTTCTCGGCGACTGGTTCACCGCCGCAGTTCAGCATGTTCCATTCGCCAGTCGTGACGATGGC CTGCCTAAGGTTGCCATTTATGGCGCTGGTACAGCAGGCAATCAGCTCGTAGCGGCGCTGCGCATGGACAAAGTCATGCG CCCGGTCGCGTTCATCGATGATGATTCTAGTCTTACCGACCGTGTGATCGCTGGCCTGCAGGTATATCACCCGGAGCAAT TGCAATGCCTGATCGATGTAACGGGTGCTCAGGAAATCCTTTTGGCAATCCCTTCTTCCACGCGTACACGTCGTCGGGAG ATCCTTAACTTCCTGGAGGGCTTTCCGCTGCATGTCCGCACAGTTCCCGGCTTTATGGACCTGGCTAGCGGCAGGGTGAC GGTGGACGACATCCGGGAAGTGGACATTGCTGACTTGCTGGGCCGTGATGCCGTGCCTGCGCAATCAGACCTGCTGGAAC GCTGCATTGTCGAACAGACCGTGATGGTGACCGGTGCCGGTGGTTCGATCGGCTCGGAACTGTGCCGACAGATTCTGGGC CAGGCGCCGAAAACCTTGCTGCTGTTCGAGCACAGCGAGTTCAACTTGTACAGCATCCTCTCCGAACTCGAGCAGCGCAT AGCGCGCGAATCGCTGTCGGTGTGCCTGGTACCAATCCTGGGTTCGGTCCGCAACCAGCCGCAACTGTTCGATATAATGA AAACCTGGCGGGTCGACACCGTCTATCACGCCGCCGCCTACAAGCACGTGCCGATGGTGGAGCACAACATCGCCGAAGGC CTGATGAACAACGTCATCGGCACCCTGCACACCGCCCAGGCTGCGCTGCAGGCTGGCGTTGCCAACTTCGTGCTGATTTC TACCGACAAAGCTGTGCGTCCTACCAACGTGATGGGCAGCACCAAACGCTTGGCGGAAATGACCCTGCAAGCCCTTAGCC GGGAAATGGCGCCAGTGTTGTTCGGCGACAGCAGCAATGTCTCGCAGGTGAACAAGACACGCTTCACCATGGTTCGCTTC GGCAATGTGCTGGGCTCGTCGGGCTCGGTGATTCCGCTTTTCCACAAACAGATCAAGGCGGGTGGCCCGCTGACTGTCAC CCACCCGAAGATCACTCGCTACTTCATGACTATCCCCGAAGCGGCGCAGCTGGTGATTCAGGCCGGCTCGATGGGCAAGG GTGGTGATGTGTTCGTGCTGGATATGGGCGAGCCGGTGAAGATTGTGGAGCTGGCTGAGAAGATGATTCACCTGTCCGGC TTCAGCGTGCGCTCCGAACGTAACCCAATGGGCGATATTGCCATCGAGTTCAGCGGTCTGCGGCCAGGTGAAAAGCTGTA CGAGGAGCTGCTGATTGGCGATAACGTGATCGCCACACGCCACCCGATGATCATGAGCGCCAACGAAGATTTCCTAGCCT GGGATATGCTCAAGGAAGCGCTGCGGCAATTGCTGGCGGCGGTGGCTGAAGATGATTTTGTGCGGGTACGACAGCTGTTG CGCGAAACTGTGAGCGGCTATTCGCCGGAAGGTGAGATTGTCGACTGGATTTACCAGCAGCGACGGCTGGAACCCTGA Protein sequence : MDKVRTKLLALPRRHKRLLQVITDIVLIWVALWLAFVVRLGLDEMANPIIDHSWLFACAPVVAIPLFIRFGLYRAVMRYF GNDALIAIIKAVTLSALILGFIIYWASNHQNVVPRSITFNYWWLSLILVGGLRLAMRQYFLGDWFTAAVQHVPFASRDDG LPKVAIYGAGTAGNQLVAALRMDKVMRPVAFIDDDSSLTDRVIAGLQVYHPEQLQCLIDVTGAQEILLAIPSSTRTRRRE ILNFLEGFPLHVRTVPGFMDLASGRVTVDDIREVDIADLLGRDAVPAQSDLLERCIVEQTVMVTGAGGSIGSELCRQILG QAPKTLLLFEHSEFNLYSILSELEQRIARESLSVCLVPILGSVRNQPQLFDIMKTWRVDTVYHAAAYKHVPMVEHNIAEG LMNNVIGTLHTAQAALQAGVANFVLISTDKAVRPTNVMGSTKRLAEMTLQALSREMAPVLFGDSSNVSQVNKTRFTMVRF GNVLGSSGSVIPLFHKQIKAGGPLTVTHPKITRYFMTIPEAAQLVIQAGSMGKGGDVFVLDMGEPVKIVELAEKMIHLSG FSVRSERNPMGDIAIEFSGLRPGEKLYEELLIGDNVIATRHPMIMSANEDFLAWDMLKEALRQLLAAVAEDDFVRVRQLL RETVSGYSPEGEIVDWIYQQRRLEP |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| cap1D | AAA64643.1 | type 1 capsule synthesis gene | Virulence | SCCcap1 | Protein | 2e-79 | 44 |
| SSP0063 | YP_300153.1 | capsular polysaccharide biosynthesis protein | Not tested | SCC15305cap | Protein | 2e-77 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| B479_06985 | YP_007228256.1 | polysaccharide biosynthesis protein CapD | VFG0029 | Protein | 8e-120 | 45 |
| B479_06985 | YP_007228256.1 | polysaccharide biosynthesis protein CapD | VFG1300 | Protein | 9e-77 | 44 |
