Gene Information

Name : Echvi_4406 (Echvi_4406)
Accession : YP_007226600.1
Strain : Echinicola vietnamensis DSM 17526
Genome accession: NC_019904
Putative virulence/resistance : Virulence
Product : nucleotide sugar dehydrogenase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 5268769 - 5270088 bp
Length : 1320 bp
Strand : -
Note : PFAM: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; UDP-glucose/GDP-mannose dehydrogenase family, central domain; UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; TIGRFAM: nucleotide sugar dehydrogenase

DNA sequence :
ATGAATACGCTACTTTTTCCGCTTGAAAAAGCAAACATTGCCGTTATTGGCCTGGGCTATGTAGGCCTGCCCCTTGCCGT
AGAATTTGCCAAGAAGTATCCGGTGACGGGCTTTGATATCTCCGGCCCCAGGGTAGAGGAGCTCTCCAAGGGAAAGGACC
ATACCCTGGAGGTGGAGGATGAACTTTTACGGTCCGTATTGGTCAACGACAAAAATGAGTTGGGGGATGGGGCAACCGGT
TTTTACCCCACCTGCTCGGAGCGGGATATTGCTGATTGCAACGTTTATATCGTGACGGTGCCCACGCCTACCGACAAGCA
CAACCGTCCCGTGCTGACCCCAATGCTCAAGGCTTCCAAGGCCATCGGTAAGGTGTTGAAAAAAGGAGATGTGGTGATCT
ATGAATCTACCGTGTACCCCGGGGTGACCGAGGAGGAGTGCGTGCCGGTGCTGGAAAAAGGTTCAGGACTGAAATTCAAC
CAGGACTTTTTTGTGGGCTATTCCCCGGAAAGGATCAACCCTGGGGACAAGGAGCATACTGTTGCCAAGATATTAAAAGT
GACTTCCGGTAGCTGCCCTGAAGCGGCCGAGTTTATCGATGGACTTTACCGGTCGGTCATCACGGCAGGGACCTTCAAGG
CTTCCTCCATAAAAGTGGCCGAGGCGGCCAAGGTCATCGAGAATTCCCAGCGGGACATCAACATTGCCTTTGTCAACGAG
CTTTCCAAGATCTTTAACCTGTTGCATATAGATACCCAGGAAGTACTGGAGGCGGCCGGTACCAAATGGAACTTCCTCCC
TTTCCGCCCAGGCCTGGTCGGTGGGCACTGCATCGGGGTAGATCCTTTTTACCTTGCCCAAAAGGCGCAGGAAGTAGGAT
ATCACCCCGAGATCATTTTGGCAGGAAGGCGCCTGAACGATTCCATGGGCAAACATGTCGCCACCGAGGTGATCAAGCAC
ATGATGCGCAAGGACCTCAAGGTGATGGAATCCAAGGTGCTGATCCTGGGATTTACCTTCAAAGAGGATTGTCCAGATGT
ACGCAATACACGCGTGATCGATATTTACCGGGAACTGGAGAATTTTGACATTCATGTAGACGTCTACGACCCCTGGGCCA
ATCCTTCGGAAGTGGCGCACGAATACCATATCCAGGTGCTGGACCGTGACCAACAGCCGGACCTGTCTGGCTATTCGGCG
ATTATCCTGGCCGTTGCCCATCAGGAATTCAAGACCTGGACCATCCAAAAGTCCGATAAGCAGGTGGTTTACGATGTCAA
GGGCATGCTGGACAAAGGCTTGGTGGATGCACGGCTGTAA

Protein sequence :
MNTLLFPLEKANIAVIGLGYVGLPLAVEFAKKYPVTGFDISGPRVEELSKGKDHTLEVEDELLRSVLVNDKNELGDGATG
FYPTCSERDIADCNVYIVTVPTPTDKHNRPVLTPMLKASKAIGKVLKKGDVVIYESTVYPGVTEEECVPVLEKGSGLKFN
QDFFVGYSPERINPGDKEHTVAKILKVTSGSCPEAAEFIDGLYRSVITAGTFKASSIKVAEAAKVIENSQRDINIAFVNE
LSKIFNLLHIDTQEVLEAAGTKWNFLPFRPGLVGGHCIGVDPFYLAQKAQEVGYHPEIILAGRRLNDSMGKHVATEVIKH
MMRKDLKVMESKVLILGFTFKEDCPDVRNTRVIDIYRELENFDIHVDVYDPWANPSEVAHEYHIQVLDRDQQPDLSGYSA
IILAVAHQEFKTWTIQKSDKQVVYDVKGMLDKGLVDARL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tviB NP_807945.1 VI polysaccharide biosynthesis UDP-glucose/GDP-mannose dehydrogenase Virulence SPI-7 Protein 2e-114 55
tviB NP_458740.1 Vi polysaccharide biosynthesis protein, UDP-glucose/GDP-mannose dehydrogenase Virulence SPI-7 Protein 2e-114 55
cap1L AAA64651.1 type 1 capsule synthesis gene Virulence SCCcap1 Protein 4e-99 53

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Echvi_4406 YP_007226600.1 nucleotide sugar dehydrogenase VFG0431 Protein 9e-115 55