Gene Information

Name : Echvi_4209 (Echvi_4209)
Accession : YP_007226415.1
Strain : Echinicola vietnamensis DSM 17526
Genome accession: NC_019904
Putative virulence/resistance : Virulence
Product : response regulator with CheY-like receiver domain and winged-helix DNA-binding domain
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 5036542 - 5037207 bp
Length : 666 bp
Strand : -
Note : PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal

DNA sequence :

ATGAAACTGTTGATTGTAGAAGATGAACCTGGCATCGTAAATTTCTTGAAACAAGGCTTTGAGGAAGAGGGGTACCAGGT
CAGTTCTGCCCTGGATGGGGATAAGGGGTTGGACCTAGCTGTTTCCGATGATTATGATGTGCTTTTGCTGGATTGGATGG
TGCCAGGAATCAGTGGCATGGAAATTTGTCGAGCTTTTCGAAAGATCAATAAACATACGCCTATTATTTTTTTGACAGCC
AAGGATGAGGTAGCCGATGTGGTCTTTGGTCTCCAAGCCGGGGCAAATGATTATATCAAAAAACCGTTTCATTTTGAAGA
ACTGCTGGAAAGGGTAAAGGTACAGCTCAGGCCGCTATCAGGCGAACATGAAGTGTTCAGCATAGGAAATATTCGTCTGG
ATACAGGGACACATCAAGTGATCAAGGGAAGTGAAGAAATCTATCTGACCCAAAAGGAATTTTCCCTGTTGGAATACCTG
CTTCGCCAGAAAGGAAAGGTTTGCAGACGGACCCAGATCATCGAGCACGTTTGGGACATCAATTTTGATTACAGCACTGG
GGTAATCGACGTGTACATCAATGCACTTCGTAAAAAACTCCGATTGGATGAAAATGAAAATTATATCCAGACCATCCGGG
GAGTGGGGTATATTGCCAAGGAATGA

Protein sequence :

MKLLIVEDEPGIVNFLKQGFEEEGYQVSSALDGDKGLDLAVSDDYDVLLLDWMVPGISGMEICRAFRKINKHTPIIFLTA
KDEVADVVFGLQAGANDYIKKPFHFEELLERVKVQLRPLSGEHEVFSIGNIRLDTGTHQVIKGSEEIYLTQKEFSLLEYL
LRQKGKVCRRTQIIEHVWDINFDYSTGVIDVYINALRKKLRLDENENYIQTIRGVGYIAKE

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
copR	NP_460069.2	transcriptional regulatory protein YedW	Not tested	SPI-5	Protein	6e-36	43
copR	AAC33719.1	regulatory protein CopR	Not tested	SPI-5	Protein	3e-35	43

• Homologs from CARD and BacMet (resistance genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
Echvi_4209	YP_007226415.1	response regulator with CheY-like receiver domain and winged-helix DNA-binding domain	NC_007793.3914065.p0	Protein	3e-39	44
Echvi_4209	YP_007226415.1	response regulator with CheY-like receiver domain and winged-helix DNA-binding domain	NC_002758.1121390.p0	Protein	3e-39	44
Echvi_4209	YP_007226415.1	response regulator with CheY-like receiver domain and winged-helix DNA-binding domain	NC_010079.5776364.p0	Protein	3e-39	44
Echvi_4209	YP_007226415.1	response regulator with CheY-like receiver domain and winged-helix DNA-binding domain	NC_002952.2859858.p0	Protein	3e-39	44
Echvi_4209	YP_007226415.1	response regulator with CheY-like receiver domain and winged-helix DNA-binding domain	NC_007622.3794948.p0	Protein	3e-39	44
Echvi_4209	YP_007226415.1	response regulator with CheY-like receiver domain and winged-helix DNA-binding domain	NC_003923.1003417.p0	Protein	3e-39	44
Echvi_4209	YP_007226415.1	response regulator with CheY-like receiver domain and winged-helix DNA-binding domain	NC_013450.8614146.p0	Protein	3e-39	44
Echvi_4209	YP_007226415.1	response regulator with CheY-like receiver domain and winged-helix DNA-binding domain	NC_002951.3238224.p0	Protein	3e-39	44
Echvi_4209	YP_007226415.1	response regulator with CheY-like receiver domain and winged-helix DNA-binding domain	BAC0111	Protein	4e-39	44
Echvi_4209	YP_007226415.1	response regulator with CheY-like receiver domain and winged-helix DNA-binding domain	AE015929.1.gene1106.	Protein	1e-33	43
Echvi_4209	YP_007226415.1	response regulator with CheY-like receiver domain and winged-helix DNA-binding domain	BAC0125	Protein	3e-39	43
Echvi_4209	YP_007226415.1	response regulator with CheY-like receiver domain and winged-helix DNA-binding domain	BAC0083	Protein	4e-39	43
Echvi_4209	YP_007226415.1	response regulator with CheY-like receiver domain and winged-helix DNA-binding domain	BAC0308	Protein	8e-36	43
Echvi_4209	YP_007226415.1	response regulator with CheY-like receiver domain and winged-helix DNA-binding domain	BAC0638	Protein	8e-32	43
Echvi_4209	YP_007226415.1	response regulator with CheY-like receiver domain and winged-helix DNA-binding domain	AE016830.1.gene1681.	Protein	1e-38	41

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
Echvi_4209	YP_007226415.1	response regulator with CheY-like receiver domain and winged-helix DNA-binding domain	VFG0596	Protein	2e-36	43