Gene Information

Name : Echvi_4127 (Echvi_4127)
Accession : YP_007226338.1
Strain : Echinicola vietnamensis DSM 17526
Genome accession: NC_019904
Putative virulence/resistance : Resistance
Product : copper/silver-translocating P-type ATPase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4941386 - 4943425 bp
Length : 2040 bp
Strand : -
Note : PFAM: E1-E2 ATPase; haloacid dehalogenase-like hydrolase; TIGRFAM: copper-(or silver)-translocating P-type ATPase; heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC

DNA sequence :
ATGAAAGACCACAAACATCATCATAGTGATCACCACCCAAGTGGACAGGAAGCAATGGAGCATTCGTCTGAACATCACCA
TCATACCGGTCACCATGATCATCATAAGCACATGATAAGCGACTTTAAGAAGCGTTTTTATATCAATTGTGCCCTTTCGA
TTCCAGTATTGGTTTTTTCGGAAATGATCCAGCATTTTTTTGGGTTTTCATTCACTTTTCCCGGAATGGACTATGTAGCG
GCTGGTTTGTCCAGCTTTATATTTTTCTACGGTGGATGGCCATTCCTCAAGGGACTCAAAGAGGAACTTTCTGAAGGGGG
ACCAGGGATGATGACCTTGATCGCTATAGCCATTACAGTGGCCTGGACGTACAGTACGGTGGTGGTATTTGGCCTTAAAG
GAATGGTTTTTTATTGGGAACTGGTCACCTTGATTGATATTATGCTGCTGGGACACTGGCTGGAAATGCGCTCGGTAATG
GGGGCTTCAAAGGCCCTTGAGAAACTGGCAGAACTGATGCCTTCTGAGGCCCACAAATTGGACGGGGACACAATGCATGA
TGTAAAAATCAGTGAGCTGAATAAAGGAGATATCATATTGATCAAGCCTGGAGAGAAAGTTCCGGCTGATGGTAAAATTA
TAGACGGAGAAAGTGATTTGGACCAAAGCGCGCTTACAGGAGAGAGCAAACCCGTGCAAAAATCTAAAGGGGATGAGGTG
ATAGGCGGGGCAATCAATGGGGATGGCAGCCTCAAAGTGGAAGTAAAATCCTCCGGTGAGGACAGCTATCTTAGCAAAGT
GATCAGACTGGTGGAAGAAGCCCAACAAACCAAGTCAAAAACGCAAAATCTTGCCAATAGAGCAGCAAGCTGGTTGGCCT
ATATTGCCATAGGTGTGGGAATAGTCACTTTTATCGCATGGTCTTTTTTTAGTTCACAGGGCGTGGATTTTGCCCTTGAA
CGAATGGTTACCGTAATGATCATCACCTGCCCGCATGCCCTGGGTCTTGCTGTACCTCTGGTGGTTTCGATCTCGACGGC
CTTATCGGCCAAAAACGGCTTGTTGGTACGAAACCGGACAGCTTTTGAGAACAGCCGAAAAATCTCTGCCATTGTATTCG
ATAAAACCGGAACCCTGACAGAAGGTAATTTTGGTGTAAACAGGATTGAAAGCTTGTACGGCCTGCCCCAGAATGAACTG
TTATCAACTGTTGCAGCAATTGAACAGCATTCGGAACATCCCATAGCCAAAGGTATTGTGAAAGAAAGCAAAAACCGTGG
TCTCAAACTTCCCCGGACCTCAGGCTTCAGTGCCACAAAAGGAAGAGGGGTAAGTGCCAGGGTTGGAGGTGTGATTTATC
AGATCGTCAGTCCGGGATATCTGGAGGATCAAGGTCTTGACTTGCCTGAAGGAGCTATGACTGACCAAATCGAGACTATC
GTATTTGTCCTTAAGGAAGGGGAACTGATAGGATTTATTGCTTTGGCTGATCAAATTAGAAAGGAAAGTAAAGGGGCCAT
CGCATTGCTCAAGGAACAGGGCATTAAGGTATTGATGGCTACTGGGGATAATGAACAAACCGCCAAAGCAGTGGCTGATG
AACTCGGACTTGATGGCTACTTCAGCCAAGTACTGCCGCATCAAAAGTCAGAACTTATTGAGAAACTACAGTCCAAGGGA
GAATACGTAGCGATGACCGGTGATGGGGTAAATGATGCACCTGCATTGGCCAAAGCGGATATTGGGATTGCCGTGGGATC
CGGTACAGATGTAGCCGCTGAAACGGCAGACATTATTCTTACTGAAAGCAGTCCTGAGGATATCAGTCGTCTGATCATAT
TTGGAAGGGCAACCTATAATAAAATGGTTCAGAACCTTATATGGGCAACAGGCTACAATGTGATTGCCATTCCCTTGGCC
GCAGGAGTGTTATTTTCTGAGGGGATCATGATAAATCCGGCCATAGGTGCTGCGTTGATGAGCCTTAGCACCATTGTTTG
TGCCGCCAACGCACAGTTGTTGAGATTGAAGTTTAATTAA

Protein sequence :
MKDHKHHHSDHHPSGQEAMEHSSEHHHHTGHHDHHKHMISDFKKRFYINCALSIPVLVFSEMIQHFFGFSFTFPGMDYVA
AGLSSFIFFYGGWPFLKGLKEELSEGGPGMMTLIAIAITVAWTYSTVVVFGLKGMVFYWELVTLIDIMLLGHWLEMRSVM
GASKALEKLAELMPSEAHKLDGDTMHDVKISELNKGDIILIKPGEKVPADGKIIDGESDLDQSALTGESKPVQKSKGDEV
IGGAINGDGSLKVEVKSSGEDSYLSKVIRLVEEAQQTKSKTQNLANRAASWLAYIAIGVGIVTFIAWSFFSSQGVDFALE
RMVTVMIITCPHALGLAVPLVVSISTALSAKNGLLVRNRTAFENSRKISAIVFDKTGTLTEGNFGVNRIESLYGLPQNEL
LSTVAAIEQHSEHPIAKGIVKESKNRGLKLPRTSGFSATKGRGVSARVGGVIYQIVSPGYLEDQGLDLPEGAMTDQIETI
VFVLKEGELIGFIALADQIRKESKGAIALLKEQGIKVLMATGDNEQTAKAVADELGLDGYFSQVLPHQKSELIEKLQSKG
EYVAMTGDGVNDAPALAKADIGIAVGSGTDVAAETADIILTESSPEDISRLIIFGRATYNKMVQNLIWATGYNVIAIPLA
AGVLFSEGIMINPAIGAALMSLSTIVCAANAQLLRLKFN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SH0105 YP_252020.1 hypothetical protein Not tested SCCmec Protein 2e-103 45

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Echvi_4127 YP_007226338.1 copper/silver-translocating P-type ATPase BAC0629 Protein 2e-174 58
Echvi_4127 YP_007226338.1 copper/silver-translocating P-type ATPase BAC0079 Protein 3e-130 45
Echvi_4127 YP_007226338.1 copper/silver-translocating P-type ATPase BAC0383 Protein 1e-121 44