Gene Information

Name : Echvi_2622 (Echvi_2622)
Accession : YP_007224874.1
Strain : Echinicola vietnamensis DSM 17526
Genome accession: NC_019904
Putative virulence/resistance : Virulence
Product : response regulator with CheY-like receiver domain and winged-helix DNA-binding domain
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3109862 - 3110557 bp
Length : 696 bp
Strand : +
Note : PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal

DNA sequence :
GTGAAAAAAATATTGCTAGTAGAGGATGATAGCCGTGTCAGTGCATTTATCATAAAAGGCCTGCAAGAAGAAGGTTATGA
CGTGGCCCTGGCCATGGATGGCAAGACGGGGCTCCAGATGGCCCTGCAAGGCAATTATGACTTGGTTATTTTGGATATTA
TGATTCCTGAAATGAACGGGATAGAGGTCTGTAAAGCTCTTCGCAAACAGCATACACACGTACCAGTGCTGTTTTTGACG
GCATTGGGGAGCACCGAAAATGTGGTGATGGGCCTGGACAGTGGGGCAGACGACTACCTTTCTAAGCCGTTTAAGTTTAT
CGAACTGCTGGCCAGGGTGCGGACCCTGATGAGAAGGTCCACATATAGCAGTGGAAGTGAAAGCAAAACGGAAAGTACTT
ATCAGTTTGGGGACCTTGAGCTGGATGATGAGACCAAGACGGTGCTTCGAAACGGGATGGCCATCAGCCTGACCTCTACC
GAATACCGCTTGCTGCTGATGTTTATGAAAAACCAGCGCAGAGTACTCTCGCGGATCGATATTTTGGAAGAGGTCTGGGG
GATTGATTTTGATATGGGTACCAATGTGGTGGATGTTTATGTAAATTACCTGCGGAAGAAGCTGGAGAAATACCAAGGCC
CTAGGTTGATTCAGACCGTCATCGGAATGGGGTACGTGCTAAAAGAAGCCGAATGA

Protein sequence :
MKKILLVEDDSRVSAFIIKGLQEEGYDVALAMDGKTGLQMALQGNYDLVILDIMIPEMNGIEVCKALRKQHTHVPVLFLT
ALGSTENVVMGLDSGADDYLSKPFKFIELLARVRTLMRRSTYSSGSESKTESTYQFGDLELDDETKTVLRNGMAISLTST
EYRLLLMFMKNQRRVLSRIDILEEVWGIDFDMGTNVVDVYVNYLRKKLEKYQGPRLIQTVIGMGYVLKEAE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 2e-40 44
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 2e-39 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Echvi_2622 YP_007224874.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0347 Protein 6e-40 47
Echvi_2622 YP_007224874.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0111 Protein 6e-48 47
Echvi_2622 YP_007224874.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0308 Protein 1e-41 45
Echvi_2622 YP_007224874.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0125 Protein 2e-44 45
Echvi_2622 YP_007224874.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain HE999704.1.gene1528. Protein 7e-40 44
Echvi_2622 YP_007224874.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002951.3238224.p0 Protein 9e-42 42
Echvi_2622 YP_007224874.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_007793.3914065.p0 Protein 9e-42 42
Echvi_2622 YP_007224874.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002758.1121390.p0 Protein 9e-42 42
Echvi_2622 YP_007224874.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_010079.5776364.p0 Protein 9e-42 42
Echvi_2622 YP_007224874.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002952.2859858.p0 Protein 9e-42 42
Echvi_2622 YP_007224874.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_007622.3794948.p0 Protein 9e-42 42
Echvi_2622 YP_007224874.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_003923.1003417.p0 Protein 9e-42 42
Echvi_2622 YP_007224874.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_013450.8614146.p0 Protein 9e-42 42
Echvi_2622 YP_007224874.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0083 Protein 7e-42 42
Echvi_2622 YP_007224874.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0638 Protein 7e-38 42
Echvi_2622 YP_007224874.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0197 Protein 1e-42 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Echvi_2622 YP_007224874.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain VFG1390 Protein 6e-49 49
Echvi_2622 YP_007224874.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain VFG0596 Protein 6e-41 44
Echvi_2622 YP_007224874.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain VFG1389 Protein 8e-40 44