Gene Information

Name : Desdi_2869 (Desdi_2869)
Accession : YP_007221677.1
Strain : Desulfitobacterium dichloroeliminans LMG P-21439
Genome accession: NC_019903
Putative virulence/resistance : Virulence
Product : type III secretion system ATPase, FliI/YscN
Function : -
COG functional category : -
COG ID : -
EC number : 3.6.3.15
Position : 2915360 - 2916661 bp
Length : 1302 bp
Strand : -
Note : PFAM: ATP synthase alpha/beta family, beta-barrel domain; ATP synthase alpha/beta family, nucleotide-binding domain

DNA sequence :
ATGACCGATTGGCCGAACTTGGTTGACAAGATTGACGATTTGGATTTGATTGTATCTCATGGGCGGGTGGCGAAAATCGT
TGGACTCATGATTGAATCCGATGGTCCCCGAGCGAGCGTGGGAGAATATTGCAAGATCCATACCCAACATGGTCAAGAAA
TTCCGGCTGAGGTGGTGGGATTTCGCAATTCTACGACTTTGCTGATGCCCTTGGCCGAGTTGGAGGGAATTTCCCCGGGT
GATCGGGTCATCCCTCAACAGCATAAACTTAAGGTTGGTGTCGGATCGGCCCTTCTTGGTCGCATCATTGATGGTCTCGG
GCAGCCCTTGGACGGCCGTCCCTTGTTCACAAGCCGGGATTATCCTTTGCAAAACGCCCCACCCAATGCCTTTCAGCGCC
CCCGCATCCGTGACCACCTGAGTGTGGGAGTAAGAACAGTTGATGGACTCTTGACCTTGGGTAGAGGACAGAGATTAGGG
ATTTTTGCTGGATCTGGGGTCGGGAAAAGCACCTTATTGGGGATGATGGCACGGAATACCACCGCCAGCGTGAATGTAAT
CGCATTGGTGGGGGAACGTGGCCGAGAGCTCCGCGACTTTATTGAAAAGGATCTGGGCGAAGCTGGTTTAGAGCGTTCGG
TATTGATAGTAGCGACCTCAGATCAACCGGCATTGGTTCGCTTGAAAGCAGCCTTTACCGCTACTGCCATTGCCGAATAC
TTTCGGGATCAAGGGCAAGACGTTCTTTTAATGATGGATTCCGTGACACGTTTCGCCATGGCCCAACGGGAAGTCGGTCT
AACCGCCGGAGAACCACCAGCCACTCGTGGCTACCCTCCATCGGTTTTTGCGCTCTTACCTAAGCTACTGGAACGTTCGG
GGATGAGCGAGAGTGGTAGCATCACTGGAATCTACACAGTACTTGTAGATGGTGATGATCACAACGAACCCATCGCCGAC
TCCGTCAGGGGAATCCTCGATGGGCATATTGTCTTAACCCGGGAATTAGCGATGCAAAACCATTATCCGGCCATTGACAC
CCTACAATCCGTCAGTCGGGTTATGAATGATATTATTTCTCCAGAACATAAGGACCTTGCCGGGAAATTTCGAGAACACC
TAGCCGTCTACAACGATGCCAAAGATTTGATTGATATTGGTGCCTACGTGACCGGTAGCAATCCTCGCATCGATGATGCT
ATCCAGCATATCGAAGGGATCAATCGCTTCCTCCGCCAAGATGTAGAGGAGATGGCCACCTTCGACGAGATGATTGAACA
GCTTAAGTTGGCTCTCCAATGA

Protein sequence :
MTDWPNLVDKIDDLDLIVSHGRVAKIVGLMIESDGPRASVGEYCKIHTQHGQEIPAEVVGFRNSTTLLMPLAELEGISPG
DRVIPQQHKLKVGVGSALLGRIIDGLGQPLDGRPLFTSRDYPLQNAPPNAFQRPRIRDHLSVGVRTVDGLLTLGRGQRLG
IFAGSGVGKSTLLGMMARNTTASVNVIALVGERGRELRDFIEKDLGEAGLERSVLIVATSDQPALVRLKAAFTATAIAEY
FRDQGQDVLLMMDSVTRFAMAQREVGLTAGEPPATRGYPPSVFALLPKLLERSGMSESGSITGIYTVLVDGDDHNEPIAD
SVRGILDGHIVLTRELAMQNHYPAIDTLQSVSRVMNDIISPEHKDLAGKFREHLAVYNDAKDLIDIGAYVTGSNPRIDDA
IQHIEGINRFLRQDVEEMATFDEMIEQLKLALQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscN AAO18044.1 LscN Virulence TTSS locus Protein 1e-98 54
hrpB6 BAB07852.1 HrpB6 Virulence Hrp PAI Protein 3e-100 54
hrpB6 AAF61281.1 HrpB6 Virulence Hrp PAI Protein 3e-100 54
XC_3006 YP_244074.1 type III secretion system ATPase Virulence Hrp PAI Protein 2e-98 54
hrcN AAP34339.1 HrcN Virulence Hrp PAI Protein 2e-100 54
hrcN NP_636610.1 type III secretion system ATPase Virulence Hrp PAI Protein 2e-98 54
hrcN NP_640767.1 type III secretion system ATPase Virulence Hrp PAI Protein 9e-100 54
hrcN YP_198730.1 type III secretion system ATPase Virulence Hrp PAI Protein 4e-100 54
hrpB6 AAB08461.1 HrpB6 Virulence Hrp PAI Protein 6e-99 53
hrcN YP_362163.1 type III secretion system ATPase Virulence Hrp PAI Protein 8e-99 53
YPO0267 YP_002345348.1 type III secretion system ATPase Virulence Not named Protein 3e-86 50
ssaN NP_460380.1 type III secretion system ATPase Virulence SPI-2 Protein 9e-86 49
ssaN CAA70537.1 secretion system apparatus Virulence SPI-2 Protein 7e-86 49
ssaN YP_216423.1 type III secretion system ATPase Virulence SPI-2 Protein 3e-86 49
escN AFO66300.1 putative LEE-encoded type III secretion system ATPase Virulence SESS LEE Protein 2e-83 49
escN AFO66415.1 putative LEE-encoded type III secretion system ATPase Virulence SESS LEE Protein 2e-83 49
ssaN NP_456113.1 putative type III secretion ATP synthase Virulence SPI-2 Protein 2e-85 48
ssaN NP_805086.1 type III secretion system ATPase Virulence SPI-2 Protein 2e-85 48
escN YP_003232153.1 T3SS structure protein EscN Virulence LEE Protein 3e-86 48
escN YP_003236088.1 translocator EscN Virulence LEE Protein 1e-86 48
escN AAC31513.1 L0034 Virulence LEE Protein 3e-86 48
unnamed ACU09458.1 type III secretion apparatus H+-transporting two-sector ATPase Virulence LEE Protein 3e-86 48
escN NP_290268.1 hypothetical protein Virulence LEE Protein 4e-86 48
ECs4568 NP_312595.1 EscN Virulence LEE Protein 4e-86 48
escN AAC38383.1 EscN Virulence LEE Protein 2e-86 48
unnamed AAL06369.1 EscN Virulence LEE Protein 5e-86 48
hrcN AAG33879.1 HrcN Virulence Hrp PAI Protein 2e-79 47
hrcN AAR25633.1 type III secretion cytoplasmic ATPase HrcN Not tested Not named Protein 1e-75 47
hrcN NP_791227.1 type III secretion cytoplasmic ATPase HrcN Virulence Hrp PAI Protein 7e-81 47
escN AAK26715.1 EscN Virulence LEE Protein 3e-86 47
hrcN AAT96195.1 HrcN Virulence T-PAI Protein 4e-81 47
escN AAL57542.1 EscN Virulence LEE Protein 3e-86 47
hrcN AAT96141.1 HrcN Virulence T-PAI Protein 4e-81 47
escN CAI43874.1 EscN protein Virulence LEE Protein 3e-86 47
escN CAC81862.1 EscN protein Virulence LEE II Protein 2e-86 47
hrcN ABA47275.1 HrcN Virulence S-PAI Protein 3e-84 47
escN YP_003223475.1 translocator EscN Virulence LEE Protein 4e-86 47
hrcN AAT96258.1 HrcN Virulence S-PAI Protein 1e-77 47
hrcN AAT96299.1 HrcN Virulence S-PAI Protein 4e-78 47
hrcN AAT96339.1 HrcN Virulence S-PAI Protein 2e-78 47
hrcN AAB06001.1 HrcN Virulence Hrp PAI Protein 1e-82 46
hrcN ABQ88354.1 HrcN Virulence Hrp PAI Protein 3e-75 46
hrpJ4 AAA81942.1 HrpJ4 Virulence Hrp PAI Protein 3e-75 46
invC AAS66861.1 InvC Not tested SSR-2 Protein 3e-69 44
invC YP_217813.1 ATP synthase SpaL Virulence SPI-1 Protein 3e-64 42
spaI NP_457288.1 secretory apparatus ATP synthase (associated with virulence) Virulence SPI-1 Protein 3e-64 42
spaI NP_806497.1 ATP synthase SpaL Virulence SPI-1 Protein 3e-64 42
invC NP_461815.1 ATP synthase SpaL Virulence SPI-1 Protein 3e-64 42
ECs3730 NP_311757.1 ATP synthase SpaL Not tested LIM Protein 4e-64 42
ysaN AAS66842.1 YsaN Not tested SSR-1 Protein 1e-64 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Desdi_2869 YP_007221677.1 type III secretion system ATPase, FliI/YscN VFG2144 Protein 4e-103 54
Desdi_2869 YP_007221677.1 type III secretion system ATPase, FliI/YscN VFG0048 Protein 8e-102 54
Desdi_2869 YP_007221677.1 type III secretion system ATPase, FliI/YscN VFG0192 Protein 7e-101 54
Desdi_2869 YP_007221677.1 type III secretion system ATPase, FliI/YscN VFG0390 Protein 8e-98 53
Desdi_2869 YP_007221677.1 type III secretion system ATPase, FliI/YscN VFG2331 Protein 2e-85 50
Desdi_2869 YP_007221677.1 type III secretion system ATPase, FliI/YscN VFG1254 Protein 1e-95 50
Desdi_2869 YP_007221677.1 type III secretion system ATPase, FliI/YscN VFG2499 Protein 2e-87 50
Desdi_2869 YP_007221677.1 type III secretion system ATPase, FliI/YscN VFG0515 Protein 4e-86 49
Desdi_2869 YP_007221677.1 type III secretion system ATPase, FliI/YscN VFG0812 Protein 2e-86 48
Desdi_2869 YP_007221677.1 type III secretion system ATPase, FliI/YscN VFG0730 Protein 1e-86 48
Desdi_2869 YP_007221677.1 type III secretion system ATPase, FliI/YscN VFG0555 Protein 1e-64 42
Desdi_2869 YP_007221677.1 type III secretion system ATPase, FliI/YscN VFG2459 Protein 1e-76 42
Desdi_2869 YP_007221677.1 type III secretion system ATPase, FliI/YscN VFG1008 Protein 3e-67 41
Desdi_2869 YP_007221677.1 type III secretion system ATPase, FliI/YscN VFG1778 Protein 5e-65 41