Gene Information

Name : Desdi_1884 (Desdi_1884)
Accession : YP_007220729.1
Strain : Desulfitobacterium dichloroeliminans LMG P-21439
Genome accession: NC_019903
Putative virulence/resistance : Virulence
Product : pyruvate kinase
Function : -
COG functional category : -
COG ID : -
EC number : 2.7.1.40
Position : 1910244 - 1911977 bp
Length : 1734 bp
Strand : -
Note : PFAM: Pyruvate kinase, barrel domain; PEP-utilising enzyme, mobile domain; Pyruvate kinase, alpha/beta domain; TIGRFAM: pyruvate kinase

DNA sequence :
ATGCGTAGAACAAAAATAGTCTGTACAATCGGACCAGCCAGCGAATCCAAGGAAAATATCCATCAATTGCTCAAGGCTGG
AATGAATGTAGCTCGTTTAAATTTCTCTCATGGCACCCATGCCGAGCATGGCAAGCGGATTCGCACTTTACGGGAAGAGG
CTCAAAGGCTTGACATCCATTTAGGAATCCTTCTCGATACCAAGGGTCCGGAAATACGCACAGGTATGGTCCCGGATTCA
GGCGTTCAATTAAACCGTGAGGCGATTTTTATTCTTGATGGTGATCTTTCTACTCTTGGCTCAAGTGAGAGAGTAGGCAT
AACCTATGCCGAACTATGGAAAGAGGTCAGTCAAGGAACTCATATACTACTCGATGATGGTCTCATCGATCTTGAAGTCA
TTTCTGTAGCAGAAGAAAAAATCACCACCCGGATTCAAAACGGTGGGATTTTAAAATCGAAAAAAGGGGTTAACGTCCCA
GGAGTCTCCATTCAACTTCCCGCTATTACGGAAAAGGATCGGGAAGATATCCTTTTTGGACTGCGGGAAGGAATTGATTT
CATCGCTGCCTCTTTTTCCCGCAAAGCGGCTGACATCTTAGCCGTACGACGGTTGGTAGAAGAAGAAGGGTCGAATGTAA
AAATCATTGCTAAGATTGAAAGTCGTGAAGGCATTGATAATTTAGACGAAATTTTAGAGGTCTCAGACGGACTTATGGTT
GCCAGAGGAGACCTAGGGGTTGAAGTTCCAGTAGAAGAGGTCCCCATCCATCAAAAGGATATGATTAATAAATGTCATAG
CTTGGGGAAACCCGTTATCGTGGCCACCCAAATGTTAGATTCCATGATGCGCAATCCTCGGCCTACTCGGGCAGAAGCCA
GTGATGTAGCCAATGCAATCTTGGATGGTACAGATGCTATTATGCTGTCTGGGGAAACTGCTGCTGGTCAGTATCCTATC
GAAGCCGTTGAGATGATGAACAAGATTGCTCTCCAGACTGAAAAGCACTTTCTTGATGGACGTACCTTTTATGATCCACA
TATCAACATCGCTGAAGCAATCAGTCACGCCAGCTATACCATTGCTAGAGACCTAGAAGCAGCAGCCATTCTTACCCCAA
CCCATTCGGGCATGACAGCCCGCATGATTTCCAAATTCCGACCCCAATCTCTGATCATTGCAGCTACTCCATTTGAACAG
GTAGCCCGTCAGCTCTCCTTGTCATGGGGAATTAATCCTTTGCTCATACCGGAAAGTTCCGATACTGATCAACTTTTATC
TGTTTCTGTAAATCAAGGGATTTCTCATCACCTTATTAAAACAGGGGACGTGGTCGTCATTACAGCAGGGGTTCCCGTTG
GAAAAGTGGGTACTACCAATATAATTAAAGTTCAAGTGATTGGCGATGTGATTGCCAAGGGAACTGGAATTGGGCGCAAA
TCTTATTCTGGGGCAGCACGAACTTCTGATACCGACCTTGATTCCTTCAAACAGGGAGATATTCTTGTCGCTCCCTATAC
CGATAAAGAATTGATTAGTTTAATCGCCAAGGCAGGAGCCCTCGTTGTGGAAGAAGGGGGACTCACTTCCCATGGCGCAC
TCGCTGCTTTACACTATGGGATTCCAACCATCGTTGGCGCCAAAGATGTAATACGGAAAATTAAGGACGGTCAAATATTG
ACTGTGGATGCATTAGCTGGGGTCGTCTACGACGGTATTGTCAGCATTTTATAA

Protein sequence :
MRRTKIVCTIGPASESKENIHQLLKAGMNVARLNFSHGTHAEHGKRIRTLREEAQRLDIHLGILLDTKGPEIRTGMVPDS
GVQLNREAIFILDGDLSTLGSSERVGITYAELWKEVSQGTHILLDDGLIDLEVISVAEEKITTRIQNGGILKSKKGVNVP
GVSIQLPAITEKDREDILFGLREGIDFIAASFSRKAADILAVRRLVEEEGSNVKIIAKIESREGIDNLDEILEVSDGLMV
ARGDLGVEVPVEEVPIHQKDMINKCHSLGKPVIVATQMLDSMMRNPRPTRAEASDVANAILDGTDAIMLSGETAAGQYPI
EAVEMMNKIALQTEKHFLDGRTFYDPHINIAEAISHASYTIARDLEAAAILTPTHSGMTARMISKFRPQSLIIAATPFEQ
VARQLSLSWGINPLLIPESSDTDQLLSVSVNQGISHHLIKTGDVVVITAGVPVGKVGTTNIIKVQVIGDVIAKGTGIGRK
SYSGAARTSDTDLDSFKQGDILVAPYTDKELISLIAKAGALVVEEGGLTSHGALAALHYGIPTIVGAKDVIRKIKDGQIL
TVDALAGVVYDGIVSIL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
STY1744 NP_456147.1 pyruvate kinase Not tested SPI-2 Protein 2e-101 49
pykF YP_216386.1 pyruvate kinase Not tested SPI-2 Protein 7e-102 49
pykF NP_805051.1 pyruvate kinase Not tested SPI-2 Protein 7e-102 49
pykF CAA68205.1 pyruvate kinase like protein Not tested SPI-2 Protein 1e-101 49
pykA NP_273151.1 pyruvate kinase Not tested IHT-A Protein 3e-65 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Desdi_1884 YP_007220729.1 pyruvate kinase VFG0479 Protein 3e-102 49