Gene Information

Name : Desdi_0156 (Desdi_0156)
Accession : YP_007219112.1
Strain : Desulfitobacterium dichloroeliminans LMG P-21439
Genome accession: NC_019903
Putative virulence/resistance : Virulence
Product : response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 161027 - 162415 bp
Length : 1389 bp
Strand : +
Note : PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain

DNA sequence :
ATGGGTAAGGTGCGCCATATTGTCGTCATTGATGATGAGTCAGATATGCTAGAAACATGTGCTAGGGTTATCCACCGCAT
GGGCTACGACTGTACAACCTTTGACGATGGTTGTGAAGCTATAGAGGAAATCTGTAAAATTCAGCCGGACTTGATTATAA
CCGATATCAAAATGCCCGGATGTGATGGTTTTGAAGTGTTAGAGAAGGCTAAGGCCTGTGTCCCCCAGGCGAGAGTAGTT
GTCATCACGGGATATGCTACGGTGGATTCCGCCGTACAAGCCATGAAGGAAGGGGCTTATGATTACCTTTCCAAGCCATT
CCCTATCGAACAGTTACAGATGACAATCAATAAAGCCCTTCAACACATCGCCTTAACGGAGGAAAACCAATTGCTCCGCG
CCCAGCTACAGGAGGGCCTTAACACCGATAATATTATCGGTGCCCGGGGCGGGCTGCAAGGAATCTTTGCAACAATCGGC
AAGATTTCCAACAGCGATGCTTCCATTCTTATTTTGGGTGAAAGCGGTACCGGCAAAGAAGTAATCGCCCGAGCTATTCA
CAAAAACAGCAGGCGTTCCACCGGTCCTTTCATTCCGGTGGATTGTGCTTCCTTGCCGGAAAATCTTTTGGAAAGTGAGC
TCTTTGGCCATGAAAGGGGATCCTTTACCGGAGCTAATACTACCAAGCAGGGATTATTGGAAATGGCTCATGGGGGAACA
CTTTTCCTAGATGAATTGGGGGAGCTGACTCTCGCCATGCAGGCGAAGTTGTTAAGAACCTTAGAAGAGCGAGCGATCAG
ACGAGTCGGCGGTAATCGTCTGATTAATGTGGATATTCGAATTGTCGCGGCTACTAACCGTGATTTAGAGGAAGCAGTTC
TTCGCAAGGAGTTTAGAGAAGATCTCTATTATCGAATCAATGTCATTACTTTGAAGCTACCGCTCCTGCGTGAGCGCCAG
CAGGATATCCCCTTACTTGTTAATCATTTTTGTAGGAAATTTGCCCAGGATATGAACAAGAAAGTGGCCGGATTCACACC
TGAGGCCCTAAAGATAATGAGGGAATATCCCTGGCCGGGCAATATCCGCGAGCTGCGAAATGTCGTGGAAAGGGCTATTT
CCTTAGCAGACTCGGAGCTGGTCGAGGTCCGTGATCTACCCCAGAAGATCATCGATGGACAAGAAGAAATCCTCACTGAA
CAGGAGGATTTGGGTTCGCTTTCTTTTCACGCGGCCAAAGATATTTGGTTGAGGAGGTTTGAAATAAAGTACCTTGAGGA
GCTCTTAAATAAGCATAATGGTAATATTACGCAGGCGGCAAAATCAGCCGGTATCGACCGGAAAACAATCCATCGGCTGA
TCAATAAGTATGATTTGCCGATGAGTTAA

Protein sequence :
MGKVRHIVVIDDESDMLETCARVIHRMGYDCTTFDDGCEAIEEICKIQPDLIITDIKMPGCDGFEVLEKAKACVPQARVV
VITGYATVDSAVQAMKEGAYDYLSKPFPIEQLQMTINKALQHIALTEENQLLRAQLQEGLNTDNIIGARGGLQGIFATIG
KISNSDASILILGESGTGKEVIARAIHKNSRRSTGPFIPVDCASLPENLLESELFGHERGSFTGANTTKQGLLEMAHGGT
LFLDELGELTLAMQAKLLRTLEERAIRRVGGNRLINVDIRIVAATNRDLEEAVLRKEFREDLYYRINVITLKLPLLRERQ
QDIPLLVNHFCRKFAQDMNKKVAGFTPEALKIMREYPWPGNIRELRNVVERAISLADSELVEVRDLPQKIIDGQEEILTE
QEDLGSLSFHAAKDIWLRRFEIKYLEELLNKHNGNITQAAKSAGIDRKTIHRLINKYDLPMS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 4e-65 42
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 4e-65 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Desdi_0156 YP_007219112.1 response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains BAC0089 Protein 1e-98 44
Desdi_0156 YP_007219112.1 response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains BAC0467 Protein 1e-82 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Desdi_0156 YP_007219112.1 response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains VFG0116 Protein 6e-69 42
Desdi_0156 YP_007219112.1 response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains VFG1214 Protein 4e-69 41