Gene Information

Name : Desdi_1472 (Desdi_1472)
Accession : YP_007220363.1
Strain : Desulfitobacterium dichloroeliminans LMG P-21439
Genome accession: NC_019903
Putative virulence/resistance : Resistance
Product : vancomycin resistance protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1499098 - 1499937 bp
Length : 840 bp
Strand : +
Note : PFAM: VanW like protein

DNA sequence : 
ATGAAAAGAAAAAGGGTTACACAGTTGTTTCCATTTTTAATACCGGTCCGCAAGACACAAAGAAAATTATTCTTTTATAT
CAAGATGTACTTTGATCGAAACCACTATGCAAAAGCAAAATCTCCAGAGTTTTTACCTTATAGCATCTATGAAACCAAGT
CGAAACTTCTTAATGAAAACACAGGCTTCGATATGAAATACCAAGAAAACAAGGTGTTTAATCTGCGTCTTGCCGCGGAG
CCCGTCAATGGTCTGATAATCCGCCCTGGTGAAACATTTTCATTTTGGCAGGTTGTGAGATATGCCGAGAGAAATGAGCG
GTATAAGTATGGTTTGTGCGTAGTCAATGATGAATTGATCACGGTGCCGGGAGGCGGTTTGTGTCATCTCAGCAATTTGC
TGTTCTGGGTGTTTCTGCATGTTCCCCTCACTATTGTCGAACGGCATCCTCATGGGATTAAGGATTTTCCTTCTCCTGAT
GAGGATGAACCGGATAGTGTGGACGCGACGATTAACGAAGGGTGGTTGGATTTGAAAGTAAGAAACAATACCAGTCTTAC
CTTCCAGATTGAAATATCCTTCGATGAGTCTTTCATTTATGGCCGTATTTTTGTGGATCAAGCCGAAGGGTATAGTTACG
AAGTCATTAACCGAGATAAGAGTTTTTTTAAAAAGGGTGGAAAGACCTTTGAGCGGGTTTCTGTTTGCAGGCAGGTGATA
GACAACAAATCCCAACAGGTTATTTCCGAAAACCTGCTTTATACGGATATATTTGAAATCGGATATGCGCTTCCAGAAGG
AACTGTTATAGAAGGTGAAGAGGATGGATACGATGATTAA

Protein sequence : 
MKRKRVTQLFPFLIPVRKTQRKLFFYIKMYFDRNHYAKAKSPEFLPYSIYETKSKLLNENTGFDMKYQENKVFNLRLAAE
PVNGLIIRPGETFSFWQVVRYAERNERYKYGLCVVNDELITVPGGGLCHLSNLLFWVFLHVPLTIVERHPHGIKDFPSPD
EDEPDSVDATINEGWLDLKVRNNTSLTFQIEISFDESFIYGRIFVDQAEGYSYEVINRDKSFFKKGGKTFERVSVCRQVI
DNKSQQVISENLLYTDIFEIGYALPEGTVIEGEEDGYDD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
vanW NP_815953.1 vancomycin B-type resistance protein VanW Not tested Not named Protein 5e-62 50
vanWB YP_008394257.1 vancomycin B-type resistance protein VanW Not tested Not named Protein 2e-60 49

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Desdi_1472 YP_007220363.1 vancomycin resistance protein DQ212986.1.gene7.p01 Protein 1e-68 57
Desdi_1472 YP_007220363.1 vancomycin resistance protein AE016830.1.gene2252. Protein 2e-62 50
Desdi_1472 YP_007220363.1 vancomycin resistance protein U35369.1.gene4.p01 Protein 2e-62 50
Desdi_1472 YP_007220363.1 vancomycin resistance protein AF310956.2.orf3.gene Protein 7e-61 49
Desdi_1472 YP_007220363.1 vancomycin resistance protein AF253562.2.orf3.gene Protein 4e-45 46