Gene Information

Name : Desdi_1113 (Desdi_1113)
Accession : YP_007220024.1
Strain : Desulfitobacterium dichloroeliminans LMG P-21439
Genome accession: NC_019903
Putative virulence/resistance : Resistance
Product : response regulator with CheY-like receiver domain and winged-helix DNA-binding domain
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1157589 - 1158284 bp
Length : 696 bp
Strand : -
Note : PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal

DNA sequence :
ATGGACAAAAAACAACTCCTCATAGTAGATGATGAAGAACATATCTGTAATCTAGTTAGTCTATACTTAAGCGACGAATT
TCATATTACAAAAGTATATGATGGACACACTGCCCTATCGGTGTTCGTAGAGAAAAAATTCGATTTAATCGTGCTCGATA
TTATGCTGCCTGGTCTTAATGGTTGGGAGTTGTGCCGAAAAATCCGTATGTTATCCGATACGCCCGTCATTATGTTAACT
GCTAAAGACGACCCACACGATAAAATTCTCGGATTCGACTTAGGCGCTGATGATTATGTCACAAAGCCATTTAATCCAGG
TGAACTTTTGGCTAGAGCCAAAGCCGTATTACGCCGTTTTAATTCAGCTAGTTCTGAAGAGCTTCAAATCATAAAGTACC
CAGGGTTCATCCTTAACAAAGAATCCTTTAAGGTGGAAATCTTGGGCCAACTTCTTGAGCTCACTGCCAAAGAATTTAGT
CTGCTTTGGTTTTTTGCCAGCAATCCAGGAATAGTACTGCAACGAGAAAATATTATGCTAAAAGTTTGGGGATTTGATTA
TTTGGGGGATACCCGGACCATTGATAATACTATTAAACGCCTAAGAAGAAAGCTTGAATCCGTTCCCGAAGCACCCGTAT
ACATACAAACTGTCTGGGGACTTGGCTATAAGTTCGAGGTCGCCCGAAATGAATAA

Protein sequence :
MDKKQLLIVDDEEHICNLVSLYLSDEFHITKVYDGHTALSVFVEKKFDLIVLDIMLPGLNGWELCRKIRMLSDTPVIMLT
AKDDPHDKILGFDLGADDYVTKPFNPGELLARAKAVLRRFNSASSEELQIIKYPGFILNKESFKVEILGQLLELTAKEFS
LLWFFASNPGIVLQRENIMLKVWGFDYLGDTRTIDNTIKRLRRKLESVPEAPVYIQTVWGLGYKFEVARNE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
vanRB YP_008394254.1 DNA-binding response regulator VanRB Not tested Not named Protein 1e-35 42
vanRB NP_815956.1 DNA-binding response regulator VanRB Not tested Not named Protein 3e-35 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Desdi_1113 YP_007220024.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_012469.1.7686381. Protein 5e-41 44
Desdi_1113 YP_007220024.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_010079.5776364.p0 Protein 4e-40 43
Desdi_1113 YP_007220024.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002952.2859858.p0 Protein 4e-40 43
Desdi_1113 YP_007220024.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_007622.3794948.p0 Protein 4e-40 43
Desdi_1113 YP_007220024.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_003923.1003417.p0 Protein 4e-40 43
Desdi_1113 YP_007220024.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_013450.8614146.p0 Protein 4e-40 43
Desdi_1113 YP_007220024.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002951.3238224.p0 Protein 4e-40 43
Desdi_1113 YP_007220024.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_007793.3914065.p0 Protein 4e-40 43
Desdi_1113 YP_007220024.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002758.1121390.p0 Protein 4e-40 43
Desdi_1113 YP_007220024.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain AM180355.1.gene1830. Protein 4e-42 43
Desdi_1113 YP_007220024.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain AF310956.2.orf0.gene Protein 5e-36 42
Desdi_1113 YP_007220024.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain U35369.1.gene1.p01 Protein 1e-35 42
Desdi_1113 YP_007220024.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain AE016830.1.gene2255. Protein 1e-35 42
Desdi_1113 YP_007220024.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain AE015929.1.gene1106. Protein 2e-35 42
Desdi_1113 YP_007220024.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain AF155139.2.orf0.gene Protein 1e-39 42
Desdi_1113 YP_007220024.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain DQ212986.1.gene4.p01 Protein 4e-41 42
Desdi_1113 YP_007220024.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain AF162694.1.orf4.gene Protein 2e-33 42
Desdi_1113 YP_007220024.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_014475.1.orf0.gen Protein 1e-39 42
Desdi_1113 YP_007220024.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_005054.2598277.p0 Protein 1e-39 42
Desdi_1113 YP_007220024.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain CP000034.1.gene3671. Protein 2e-40 42
Desdi_1113 YP_007220024.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_007793.3914279.p0 Protein 3e-41 41
Desdi_1113 YP_007220024.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002952.2859905.p0 Protein 4e-41 41
Desdi_1113 YP_007220024.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_007622.3794472.p0 Protein 2e-41 41
Desdi_1113 YP_007220024.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002745.1124361.p0 Protein 3e-41 41
Desdi_1113 YP_007220024.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_009782.5559369.p0 Protein 3e-41 41
Desdi_1113 YP_007220024.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002951.3237708.p0 Protein 3e-41 41
Desdi_1113 YP_007220024.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_003923.1003749.p0 Protein 3e-41 41
Desdi_1113 YP_007220024.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002758.1121668.p0 Protein 3e-41 41
Desdi_1113 YP_007220024.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_009641.5332272.p0 Protein 3e-41 41
Desdi_1113 YP_007220024.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_013450.8614421.p0 Protein 3e-41 41
Desdi_1113 YP_007220024.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain HE999704.1.gene2815. Protein 2e-39 41
Desdi_1113 YP_007220024.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_012469.1.7685629. Protein 3e-43 41
Desdi_1113 YP_007220024.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain AF253562.2.orf0.gene Protein 1e-25 41