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Name : xcpR [H] (TVNIR_3843) Accession : YP_007218948.1 Strain : Thioalkalivibrio nitratireducens DSM 14787 Genome accession: NC_019902 Putative virulence/resistance : Virulence Product : General secretion pathway protein E Function : - COG functional category : - COG ID : - EC number : - Position : 3982595 - 3984106 bp Length : 1512 bp Strand : - Note : - DNA sequence : ATGAGCGCCGCGGGGGACCGGGCCGCGGCTGGCGGCGCGCACGAGCCCCTGAGCCCCGGCTACGGGTTCTCGCGCCGTTC CGGCGTGCTGCCCGGACCGGCCGTCGACGGCCAGCGCATCGTGTACTTGCGCGCGGACGCCGATCCGATGGCGGTGCTGG AGATCCGCAGGCGCAGCGCCGAGCGGCTGCAGCTGGCGACGCTGAGCACCGAGGAATTCGACCGCAAGCTGCGCGAGCAG CACGAACGCTCGAGCGGCGAGGCGATGAACCTGGTGGAGGGGCTGGGCGACGAAGGCGACCTGCTCAGTGTCGCGGAATC GCTGGCCGAGCCGGAGGATCTGCTCGAGGCCGAGGACGACGCGCCGATCATCCGGCTGATCAACGCGCTATTGACCGAGG CGGTGCGCGAGAACGCGTCGGACATCCACATCGAACCGTTCGAGTCGCGTCTGTCGGTGCGCCTGCGGGTCGATGGCGTA TTGCGCGAGGTGCTGAACCCTCCGGTCGGACTGGCCCCGCTGATCGTGTCCCGGGTCAAGGTGATGGCGCGGCTCGACAT CGCCGAGAAGCGCCTGCCGCAGGACGGGCGAATTTCGCTGCGCGTCGCCGGGCGGCCGGTCGACGTGCGCGTGTCGACGC TGCCCTCGGGGCACGGCGAGCGCGTGGTGATGCGCCTGCTGGACAAGCAGGCCGGGCGGCTCGAACTGCGCCACCTGGGG ATGTCGCAGGAGCAGTACGATGCGATGGAACGGGTCATCGGCCGGCCACACGGCATCGTGCTGGTCACCGGGCCCACCGG CTCCGGCAAGACGACGACGCTCTACGCGGCACTGATGCGCCTGAACGACCGCAGTCGGAACATTCTGACGGTCGAGGATC CGATCGAGTACTACCTCGACGGCATCGGCCAGACGCAGATCAACACCCGGGTCGACATGACCTTCGCCCGCGGCCTGCGC GCGATCCTGCGCCAGGATCCGGACGTGGTGATGGTCGGCGAGATCCGCGACCTGGAGACGGTGCAGATCGCGGTGCAGGC GAGCCTGACCGGGCACCTGGTCTTCTCGACGCTGCACACCAATTCCGCGGTGGGTGCGATCACTCGGCTGCGCGACATGG GCGTCGAGCCCTTCCTGCTCGCATCCACGCTGAACGGCATCCTCGCGCAGCGGCTGGTGCGCGTGTTGTGCACCAGCTGC CGCGAGCCGGCGGCGGCAACGCGCGCGGAGTGCGAGCTGCTCGGGCAGGATCCGGGGCGCCCACCGACGATCTACCATGC GCGAGGCTGTCCCGACTGCAACGGCCTCGGCTACCGGGGCCGGACCGGGATCTACGAATTGATCGAGGTGGACGACACGC TGCGCCAGATGATCCACGACGGCGCGGGCGAACGCGCGATGACCGACCACGCGCGCCGCAGCACGCCAGGCATCCGCAGC GACGGCGTGCGCCGGATCCTGGACGGCACCACCTCGGTCGAGGAAGTGGTGCGCGTCACGCGCGAGGACTGA Protein sequence : MSAAGDRAAAGGAHEPLSPGYGFSRRSGVLPGPAVDGQRIVYLRADADPMAVLEIRRRSAERLQLATLSTEEFDRKLREQ HERSSGEAMNLVEGLGDEGDLLSVAESLAEPEDLLEAEDDAPIIRLINALLTEAVRENASDIHIEPFESRLSVRLRVDGV LREVLNPPVGLAPLIVSRVKVMARLDIAEKRLPQDGRISLRVAGRPVDVRVSTLPSGHGERVVMRLLDKQAGRLELRHLG MSQEQYDAMERVIGRPHGIVLVTGPTGSGKTTTLYAALMRLNDRSRNILTVEDPIEYYLDGIGQTQINTRVDMTFARGLR AILRQDPDVVMVGEIRDLETVQIAVQASLTGHLVFSTLHTNSAVGAITRLRDMGVEPFLLASTLNGILAQRLVRVLCTSC REPAAATRAECELLGQDPGRPPTIYHARGCPDCNGLGYRGRTGIYELIEVDDTLRQMIHDGAGERAMTDHARRSTPGIRS DGVRRILDGTTSVEEVVRVTRED |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 1e-121 | 59 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 8e-122 | 59 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| xcpR [H] | YP_007218948.1 | General secretion pathway protein E | VFG0182 | Protein | 2e-137 | 65 |
| xcpR [H] | YP_007218948.1 | General secretion pathway protein E | VFG2048 | Protein | 2e-122 | 59 |
| xcpR [H] | YP_007218948.1 | General secretion pathway protein E | VFG1876 | Protein | 4e-120 | 57 |
| xcpR [H] | YP_007218948.1 | General secretion pathway protein E | VFG2426 | Protein | 8e-76 | 49 |
