Gene Information

Name : TVNIR_3190 (TVNIR_3190)
Accession : YP_007218308.1
Strain : Thioalkalivibrio nitratireducens DSM 14787
Genome accession: NC_019902
Putative virulence/resistance : Virulence
Product : two component, sigma54 specific, transcriptional regulator, Fis family - like protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3303481 - 3304845 bp
Length : 1365 bp
Strand : -
Note : -

DNA sequence : 
ATGCCGGAGGCGGTACTGGTGGTCGAGGATGACCCCGGCCACCGTAGCCTGTTGGACGAGGAACTGACCGACGCGGGATA
TGTGGTACATGCGGTCGCGAGTGCCGAGGAGGCATTCGACGCGCTGGGAGAGCGTTCGTTCGCACTGGTGGTGAGTGACC
TGCGGTTGCCCGGGGCGGACGGCTTCGCGGTGCTCGAGCGGGCGCGGACACTGGTGCCCGCTCCCGGCGTGATCATGCTC
ACCGGGTTCGGCACCATCGACCAGGCCGTGCATGCGCTGAAGGCCGGTGCGGACGACTTCCTGACCAAGCCGGTCGATCT
GGAACACCTGTGCCTGGCCGCGGACCGCGTGCTCCAGACGCGCCGCCTGCGGGCCGAGGTCCAGCAGTACCGCGAAGCGC
TGGGAGACCACGGGTTTCACGGCATGCACGGGCGCAGCCCGGCGATGCTGCGCCTGTTCGAACTGATCCGGCGCATCGCG
CGATCCGACGGCAGCGTGCTGGTCACCGGCGAGTCGGGCACCGGCAAGGAACTCGTCGCACGGGCGCTGCACGAGGAGAG
CCCGCGTGCCGGCGGCCCGTTCGTTGCGATCAACTGCGCCGGGATTCCCGAGACCCTGCTCGAGTCGGAACTCCTGGGCC
ATGCGGCCGGCGCGTTCAGTGGCGCCCGCGGGGCGCGCAAGGGGCTGTTTCTAGAGGCGGACGGCGGAACGCTGTTCCTC
GACGAGATCGGCGAGATGCCCCCGGCGATGCAGACCAAGCTGCTGCGGTTGCTGCAGGACGGCCGCGTCCGGCCGGTCGG
TTCGAACGACGAGGTCGCGAGCGACGTGCGCATCGTGGCGGCCACCCACCGTGACCTCGCCGAGCTGTTGCGCGAAGGCC
ACTTCCGTGAAGACCTGTTCTACCGCCTGGAGACGTTCCGGATCGAGGTGCCTCCGCTGCGGGAACGGGGCGAGGACATC
GAGCGGCTGGTGTTCCACTTCCTGCGTCGGCAGGCCGCGGCGCAGGAGGTTCCATTGCGAGGGCTGGCTCCCGAGGCGCT
GCGGATGCTGCTGGGCTATCGGTTTCCGGGCAATGTGCGGGAACTCACCAGTCTGGTCGAGCGCGCCGCGACCCTGGCAC
AGGGCGAGGTGATCCAGCCGGAGGATCTGCCGGAGCGCGTTTGCGACGACCCGGGGAATGCGCGGGCCGTCGTGGCTGAT
CCCGCTGCAGGTGCACGCGACGAGGAGTGGTACACGCTGGAAGAACTCGAGGCGCGCTACATCCGCCAGGTGCTTGCCCA
TACCGGCGGTAACAAGCAGCGGGCCGCCCGGATCCTGGGTATTGGCCGCAAGACCCTGTACCGGAAATTGGGGGGTGACC
TGTGA

Protein sequence : 
MPEAVLVVEDDPGHRSLLDEELTDAGYVVHAVASAEEAFDALGERSFALVVSDLRLPGADGFAVLERARTLVPAPGVIML
TGFGTIDQAVHALKAGADDFLTKPVDLEHLCLAADRVLQTRRLRAEVQQYREALGDHGFHGMHGRSPAMLRLFELIRRIA
RSDGSVLVTGESGTGKELVARALHEESPRAGGPFVAINCAGIPETLLESELLGHAAGAFSGARGARKGLFLEADGGTLFL
DEIGEMPPAMQTKLLRLLQDGRVRPVGSNDEVASDVRIVAATHRDLAELLREGHFREDLFYRLETFRIEVPPLRERGEDI
ERLVFHFLRRQAAAQEVPLRGLAPEALRMLLGYRFPGNVRELTSLVERAATLAQGEVIQPEDLPERVCDDPGNARAVVAD
PAAGARDEEWYTLEELEARYIRQVLAHTGGNKQRAARILGIGRKTLYRKLGGDL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 1e-59 42
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 1e-59 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
TVNIR_3190 YP_007218308.1 two component, sigma54 specific, transcriptional regulator, Fis family - like protein BAC0089 Protein 1e-76 46
TVNIR_3190 YP_007218308.1 two component, sigma54 specific, transcriptional regulator, Fis family - like protein BAC0467 Protein 2e-75 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
TVNIR_3190 YP_007218308.1 two component, sigma54 specific, transcriptional regulator, Fis family - like protein VFG1249 Protein 3e-60 45
TVNIR_3190 YP_007218308.1 two component, sigma54 specific, transcriptional regulator, Fis family - like protein VFG1214 Protein 2e-69 44