Gene Information

Name : lolD [H] (TVNIR_1818)
Accession : YP_007216960.1
Strain : Thioalkalivibrio nitratireducens DSM 14787
Genome accession: NC_019902
Putative virulence/resistance : Resistance
Product : Lipoprotein releasing system ATP-binding protein LolD
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1822887 - 1823594 bp
Length : 708 bp
Strand : -
Note : -

DNA sequence :
ATGAGTGACGGAAACGCGGCGGCAGACGCAGTCGTACTGGAAGCGCGAGGGCTGGAGCGGCGTTTCCGCGAGGGCAGCCT
CGATGTGTCGGTTCTGAAGAAGATCGATCTCGAGATCCGTCGTGGCGATCAGATCGCGGTGGTCGGGGCCTCCGGTTCCG
GAAAGAGCACGCTGCTGCAGCTGCTCGGCGGGCTCGACTTGCCGACCGGGGGAGGGGTATCGATTCATGGCGAGGACTGG
TCGGCGATGAGCGACACCCGGCGCGGCGTGATGCGCAACCGGCACCTGGGCTTCGTCTACCAGTTCCACCATCTGCTACC
GGAATTCACCGCACTCGAGAACGTGGCGATCCCGCTGATGATCCGCGGGCTCAGCACCCGGCGGGCGCAGGCGGAAGCAG
CCGGGTGGCTGGACAAGGTGGATCTGTCCGAGCGGGAACGGCACAAGCCGTCGGAGCTCTCGGGCGGGGAGCGTCAGCGC
GTGGCGATTGCGCGTGCGATGGTCACCCGGCCGGCGGTGATCCTCGCCGATGAGCCCACCGGCAACCTGGATCGAGACCG
GGCCGGGAAGGTTTTCACGCTGCTGCAGGCGATGAATCGGGAGACCGGAACTGCGCTGGTGCTCGTCACGCACGATCCTG
CGCTGGCCGCACGCATGGACCGGACGCTGCATCTGACGGATGGGCAGTTGCAGGGCGCAGGCGACTGA

Protein sequence :
MSDGNAAADAVVLEARGLERRFREGSLDVSVLKKIDLEIRRGDQIAVVGASGSGKSTLLQLLGGLDLPTGGGVSIHGEDW
SAMSDTRRGVMRNRHLGFVYQFHHLLPEFTALENVAIPLMIRGLSTRRAQAEAAGWLDKVDLSERERHKPSELSGGERQR
VAIARAMVTRPAVILADEPTGNLDRDRAGKVFTLLQAMNRETGTALVLVTHDPALAARMDRTLHLTDGQLQGAGD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-19 41
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-20 41
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 2e-20 41
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-20 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
lolD [H] YP_007216960.1 Lipoprotein releasing system ATP-binding protein LolD NC_008702.1.4606598. Protein 4e-31 49
lolD [H] YP_007216960.1 Lipoprotein releasing system ATP-binding protein LolD NC_012469.1.7686878. Protein 2e-34 45
lolD [H] YP_007216960.1 Lipoprotein releasing system ATP-binding protein LolD CP001581.1.gene798.p Protein 3e-28 41