Gene Information

Name : irlR [H] (TVNIR_1101)
Accession : YP_007216262.1
Strain : Thioalkalivibrio nitratireducens DSM 14787
Genome accession: NC_019902
Putative virulence/resistance : Virulence
Product : DNA-binding heavy metal response regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1028883 - 1029563 bp
Length : 681 bp
Strand : -
Note : -

DNA sequence : 
GTGAAGATTCTGATCATCGAGGACGAGCCGAAGACCGGTGATTACCTGCGCCAGGGACTGACCGAAGCCGGTTTCGTGGT
CGACCTGGCGCGCGACGGGCTGGAAGGGCTGCATCTGGCCACCACCGGCGAGCATGACCTGCTGGTGCTGGACGTGATGC
TGCCCCGGATGGACGGCTGGGCGGTGCTGCAGGCGTTGCGCCTCGCCGGACGCGAGATGCCGGTCCTTTTTCTGACCGCG
CGAGACCAGGTCGAGGACCGGGTGCACGGGTTGGAACTCGGCGCCGACGACTACCTCGTCAAGCCGTTCGCCTTTTCCGA
GCTGCTCGCCCGGGTGCGCAGCCTGTTGCGCCGGGGCAAGACCAAGGAGCCGGAGGTGCTGACGGCCGCCGACCTCGAAC
TCGACCTGCTGCGTCGCCGCGCCACCCGCGCCGGCGTGCGTATCGATCTCACAGCCAAGGAGTTCGCACTGCTGGAACTG
CTGCTGCGGCGCAGGGGCGAGGTGCTGCCCCGGTCGCTGATCGCCTCGCAGGTCTGGGACATGAACTTCGACAGCGACAC
CAACGTGATCGAGGTCGCAGTCCGGCGCCTGCGGGCAAAGGTTGACGACCCCTTCGAACCGAAGCTGATCCGCACCGTTC
GCGGGATGGGCTACATACTTGACCCGGACGCGGCGGCATGA

Protein sequence : 
MKILIIEDEPKTGDYLRQGLTEAGFVVDLARDGLEGLHLATTGEHDLLVLDVMLPRMDGWAVLQALRLAGREMPVLFLTA
RDQVEDRVHGLELGADDYLVKPFAFSELLARVRSLLRRGKTKEPEVLTAADLELDLLRRRATRAGVRIDLTAKEFALLEL
LLRRRGEVLPRSLIASQVWDMNFDSDTNVIEVAVRRLRAKVDDPFEPKLIRTVRGMGYILDPDAAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 8e-48 60
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 7e-47 58

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
irlR [H] YP_007216262.1 DNA-binding heavy metal response regulator BAC0638 Protein 1e-55 71
irlR [H] YP_007216262.1 DNA-binding heavy metal response regulator BAC0197 Protein 1e-55 69
irlR [H] YP_007216262.1 DNA-binding heavy metal response regulator BAC0111 Protein 4e-57 67
irlR [H] YP_007216262.1 DNA-binding heavy metal response regulator BAC0083 Protein 2e-54 64
irlR [H] YP_007216262.1 DNA-binding heavy metal response regulator BAC0308 Protein 3e-55 64
irlR [H] YP_007216262.1 DNA-binding heavy metal response regulator BAC0125 Protein 4e-56 63
irlR [H] YP_007216262.1 DNA-binding heavy metal response regulator BAC0347 Protein 1e-49 61
irlR [H] YP_007216262.1 DNA-binding heavy metal response regulator HE999704.1.gene1528. Protein 5e-21 42
irlR [H] YP_007216262.1 DNA-binding heavy metal response regulator NC_002516.2.879194.p Protein 7e-21 42
irlR [H] YP_007216262.1 DNA-binding heavy metal response regulator AE000516.2.gene3505. Protein 1e-18 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
irlR [H] YP_007216262.1 DNA-binding heavy metal response regulator VFG0596 Protein 3e-48 60
irlR [H] YP_007216262.1 DNA-binding heavy metal response regulator VFG1390 Protein 4e-36 48
irlR [H] YP_007216262.1 DNA-binding heavy metal response regulator VFG1389 Protein 4e-28 47