Gene Information

Name : Theco_0130 (Theco_0130)
Accession : YP_007211376.1
Strain : Thermobacillus composti KWC4
Genome accession: NC_019897
Putative virulence/resistance : Unknown
Product : rRNA large subunit m3Psi methyltransferase RlmH
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 144436 - 144915 bp
Length : 480 bp
Strand : -
Note : PFAM: Predicted SPOUT methyltransferase; TIGRFAM: rRNA large subunit m3Psi methyltransferase RlmH

DNA sequence : 
ATGCACATTCAGATTGCGGCGGTCGGCAAGATCAAGGAGAAGTATCTGGCGGACGGCATCGCGGAATATGCGAAGCGGCT
TCGGCCGTATGTGAAGTTCGACATTCTCGAGGTGCCGGACGAGAAGGTGCCGGAGACGATGAGCCCGGCGGAAGAGGCGC
AGGCCAGGGAGCGCGAAGGCGAGCGGCTGCTGGCGTTGATCAAGCCGGATGCGCTGGTCATCGCGCTGACGCTGGACGGC
GAGCTGTGGACGAGCGAGCGGCTCGCCGAGCGGTTGGACGAGCTCGGCACATACGGCAGCGGGCACGCGGTGTTCGTCAT
CGGCGGCTCGACCGGGCTCGCCCCCGCCGTGCTGCGGCGCGCGAAGCACAAGCTGAGCTTCGGGCGGATGACGCTGCCCC
ACCAGCTGATGCGGCTCGTGCTGGCGGAGCAGATTTACCGGGCGGTGAAGATCAATCGGGGGGAGCCGTATCATAAGTGA

Protein sequence : 
MHIQIAAVGKIKEKYLADGIAEYAKRLRPYVKFDILEVPDEKVPETMSPAEEAQAREREGERLLALIKPDALVIALTLDG
ELWTSERLAERLDELGTYGSGHAVFVIGGSTGLAPAVLRRAKHKLSFGRMTLPHQLMRLVLAEQIYRAVKINRGEPYHK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed BAB72138.1 open reading frame X Not tested Type-IVb SCCmec Protein 2e-34 58
SAV0024 NP_370548.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 2e-34 58
unnamed BAC67575.1 open reading frame X Not tested Type-IVc SCCmec Protein 2e-34 58
orfXhom BAB83497.1 open reading frame X Not tested SCC 12263 Protein 4e-33 58
unnamed BAA82243.1 orfX Not tested Type-II SCCmec Protein 2e-34 58
orfX AAL26648.1 unknown Not tested SCCcap1 Protein 1e-33 58
unnamed BAD24821.1 conserved hypothetical protein orfX Not tested Type-V SCCmec Protein 2e-34 58
orfX BAA86653.1 open reading frame X Not tested Type-I SCCmec Protein 2e-34 58
unnamed BAG06184.1 conserved hypothetical protein orfX Not tested Type-VII SCCmec Protein 2e-34 58
unnamed BAB47681.1 open reading frame X Not tested Type-III SCCmec Protein 2e-34 58
unnamed BAC53844.1 open reading frame X Not tested SRImec-III and SCCmec-III region Protein 2e-34 58
unnamed BAC57492.1 hypothetical protein Not tested Type-IIIinv SCCmec Protein 2e-34 58
orfX YP_251938.1 rRNA large subunit methyltransferase Not tested SCCmec Protein 2e-33 58
unnamed BAB72121.1 hypothetical protein Not tested Type-IVa SCCmec Protein 2e-34 58
SAR0024 YP_039501.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 2e-34 58
SE0023 NP_763578.1 rRNA large subunit methyltransferase Not tested SCCpbp4 Protein 2e-32 56
SERP2529 YP_190070.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 2e-32 56
SSP0026 YP_300116.1 rRNA large subunit methyltransferase Not tested SCC15305RM Protein 2e-31 54