Gene Information

Name : join (Theco_1206)
Accession : YP_007212372.1
Strain : Thermobacillus composti KWC4
Genome accession: NC_019897
Putative virulence/resistance : Unknown
Product : transposase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1254642 - 1255458 bp
Length : 817 bp
Strand : -
Note : PFAM: Integrase core domain; manually curated

DNA sequence :
GTGTCGGAGATGTGCAAGGTTTTGAACGTATCCCGGAGCGGTTACTATCAATGGACCAGACGTCAGGAAAGCGAGTGAAA
GAAACGTCGCCGAGAACTGGAACAACAGATTAGTTGTGGACTCGCGTCGCCTGTACGGCAGCCCGAAAATCACTCATGTC
CTGCGCCAGCAAGGCGTTCGGGTATCCGAGAAAACGGTCGCCCGCATCATGAAGGAATTGGGGCTCAAGTCGCGCACCGT
CAAGAAATACAAGGCGACGACGAGCTCGAACCACCATCTGCCGGTGCATGACAATGTGCTGAACCAGCAGTTCACGGCAC
AAGCTCCCAATCAAGTCTGGATGGCAGACATCACGTACGTTCCGACAGACGAGGGATGGCTTTATGTCGCGAGCGTGATG
GACTTGTACACGCGCAAAATCGTAGGCTGGCACGCCGGCGAGCGAATGACCAAGGAATTGGTCCTGCAAGCTCTGGATCA
GGCTTACAACCGTCAACGGCCGAAAGGCGAAGTCCTGCATCATTCCGATCGCGGCAGCCAATACGCATCTCATGAGTATC
AAAAACGGCTCTTGAAATACGGGATGAAATGCAGCATGAGCCGCAAGGGCAACTGCTATGACAACGCCTGCATCGAATCG
TTCCACAGCGTGCTCAAAAAGGAACTCGTCTATCTGGAGAAGTTCAGAACCCGCAAGGAAGCCCAAAGTCGGATTTTTGA
ATACATCGAGTTCTTCTACAATCGCAAACGCGTTCATTCTGCAATTGGGTATCTTACACCCGTTGAATACGAACAAATGT
ACGATCAAGCTGCGTAA

Protein sequence :
MSEMCKVLNVSRSGYYQWTDVRKASERNVAENWNNRLVVDSRRLYGSPKITHVLRQQGVRVSEKTVARIMKELGLKSRTV
KKYKATTSSNHHLPVHDNVLNQQFTAQAPNQVWMADITYVPTDEGWLYVASVMDLYTRKIVGWHAGERMTKELVLQALDQ
AYNRQRPKGEVLHHSDRGSQYASHEYQKRLLKYGMKCSMSRKGNCYDNACIESFHSVLKKELVYLEKFRTRKEAQSRIFE
YIEFFYNRKRVHSAIGYLTPVEYEQMYDQAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAF09022.1 unknown Not tested SHI-O Protein 6e-56 48
c3575 NP_755450.1 transposase insF Not tested PAI I CFT073 Protein 2e-55 48
Z1134 NP_286669.1 hypothetical protein Not tested TAI Protein 7e-56 48
Z1573 NP_287077.1 hypothetical protein Not tested TAI Protein 7e-56 48
unnamed AAB86997.1 hypothetical 31 KD protein Not tested SHI-1 Protein 2e-55 48
hp1 AAC61713.1 Hp1 Not tested PAI I CFT073 Protein 2e-55 48
unnamed AAF09030.1 unknown Not tested SHI-O Protein 2e-55 48
tnpI AAD44751.1 TnpI Not tested SHI-2 Protein 2e-55 48
unnamed AAQ07468.1 TnpI-like protein Not tested Not named Protein 1e-53 47
unnamed AAL57581.1 transposase 1 Not tested LEE Protein 3e-48 43
unnamed AAL57519.1 transposase 1 Not tested LEE Protein 3e-48 43
ECO111_3732 YP_003236068.1 putative IS3 transposase InsF Not tested LEE Protein 6e-48 42
orfB AGK07090.1 IS1133 transposase; OrfB Not tested SGI1 Protein 2e-47 41
tnpA1133 ACK44540.1 TnpA Not tested SGI1 Protein 2e-47 41
orfB AGK07032.1 IS1133 transposase; OrfB Not tested SGI1 Protein 2e-47 41
tnpB CAB61574.1 transposase B Not tested HPI Protein 2e-35 41
trp1329B CAB46576.1 IS1329 transposase B Not tested HPI Protein 1e-35 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
join YP_007212372.1 transposase VFG1706 Protein 1e-55 48