Gene Information

Name : Sinac_0424 (Sinac_0424)
Accession : YP_007200558.1
Strain : Singulisphaera acidiphila DSM 18658
Genome accession: NC_019892
Putative virulence/resistance : Virulence
Product : response regulator with CheY-like receiver domain and winged-helix DNA-binding domain
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 562781 - 563482 bp
Length : 702 bp
Strand : +
Note : PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal

DNA sequence :
ATGGAAACCCGGATCTTGGTAGTCGAAGACGACGTCGAAATTGCCGATTCGTTGATCCGTGGATTGAGCGAAGAGGGGTA
TCTGGTCGAACACGCCCCGGACGGTGATACCGCCAGGGTGGCGCTCCTGGACCTGAACTGGGATTTGATCGTCCTTGACT
GGTGGCTCCCCGGCCCTGACGGCCTAGTCTTGCTCAAACGATTCCGCCAGTCGGGAGGCGAGTCGCCTGTCCTCTTCCTG
ACGGCGCGTGACGCCGTCTCCGACCGGGTCCGCGGTCTGGACGGCGGGGCCGACGACTATCTCTGCAAGCCGTTCAGCTT
CGAGGAACTGCTGGCCCGAGTGCGCGCCTTGGTCCGCCGGGGTGGGCACGGAACGGGGGGCGTGTTGAAGTACGGCGACG
TCCGCGTCGATGCGATCGCAGGACGGGCGGAGCGGGCCGGAAAGGCGCTCGACCTGACACCCAAGGAGCAGGCGCTCCTC
GTCTACTTCCTGAGGCACCCGGGGCAGGTCCTGACGCGAACGCGGATCTATGATCATGTCTGGGATGAGAGCTTTGACGG
TCTTTCCAACACGCTGGAAGTCCATGTCAAAGAGCTGCGCCGCAAGCTGGAATCGCAGAATGGCACCCGGCTGATCCACA
CCTTGCGTGGCCGGGGCTACCTGTTCGGCGAATCGCCCCGAGGGCCGGAAGGAATGCCATGA

Protein sequence :
METRILVVEDDVEIADSLIRGLSEEGYLVEHAPDGDTARVALLDLNWDLIVLDWWLPGPDGLVLLKRFRQSGGESPVLFL
TARDAVSDRVRGLDGGADDYLCKPFSFEELLARVRALVRRGGHGTGGVLKYGDVRVDAIAGRAERAGKALDLTPKEQALL
VYFLRHPGQVLTRTRIYDHVWDESFDGLSNTLEVHVKELRRKLESQNGTRLIHTLRGRGYLFGESPRGPEGMP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 2e-26 42
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 2e-25 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sinac_0424 YP_007200558.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0638 Protein 7e-31 47
Sinac_0424 YP_007200558.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0083 Protein 4e-34 45
Sinac_0424 YP_007200558.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0308 Protein 6e-31 45
Sinac_0424 YP_007200558.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0347 Protein 7e-34 44
Sinac_0424 YP_007200558.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0125 Protein 2e-33 43
Sinac_0424 YP_007200558.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0197 Protein 4e-32 42
Sinac_0424 YP_007200558.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0111 Protein 1e-33 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sinac_0424 YP_007200558.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain VFG1390 Protein 2e-32 45
Sinac_0424 YP_007200558.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain VFG0473 Protein 2e-24 42
Sinac_0424 YP_007200558.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain VFG0596 Protein 7e-27 42
Sinac_0424 YP_007200558.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain VFG1386 Protein 9e-31 41