Gene Information

Name : Sinac_3916 (Sinac_3916)
Accession : YP_007203839.1
Strain : Singulisphaera acidiphila DSM 18658
Genome accession: NC_019892
Putative virulence/resistance : Virulence
Product : nucleoside-diphosphate-sugar epimerase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4911154 - 4912104 bp
Length : 951 bp
Strand : +
Note : PFAM: NAD dependent epimerase/dehydratase family

DNA sequence :
GTGAAGAACCCCAGCTTGATTCTTGTGACGGGCGGAGCCGGCTTCATCGGCTCGCACCTGGTGGAAGCGCTTCTGAACGA
CGGATACCGCGTGCGGGTTGTGGATAATCTTGCCACGGGCCATCGCTCCAATCTCGCCCATTTGGAGGGCCGTTACGAGT
GGTTGGAGGGAGACCTATCGGATTTCGAGGTCTGCCGCCGGGCGGTCGACGGCGTCGAGTTCGTCTTCCATGAGGCGGCG
ATTCCGAGTGTCCCCCGGTCGGTTCGCGAGCCGCTCCCTTCTCACGCCAGCGGCCCGACGGCGACGTTGAACATGCTCGA
GGCGTCCCGGCAGGCGGGGGTCAAGCGGTTCATGTTTGCCGCGTCGAGTAGTGCCTACGGCAACACCGTGGAACTCCCCA
AGCATGAGGCGATGTTCCCCCGACCGCTCAGTCCTTACGCCGTGGGGAAGCTGGCGGGCGAACACTACGTCAGCGTCTAT
GCCCAGACGATCGGGTTGGACGGGGTGAGTCTCCGCTACTTCAACGTCTTCGGGCCGCGCCAGGACCCGTCGAGCCCGTA
CAGCGGGGTGATCTCTCGGTTCGCCCGCCTCATGTCCGAAGGGAAGCGGCCCACGGTTAACGGCGACGGCAGTCAGACGC
GGGACTTTACGTACGTCAGCAACGTCGTGGCCGCGAACCTGGCCGCCATGCGCTCCGAGAAGCCGCTCGGGGGCGTCGTG
CTCAACGTCGGCACGGGGGGGAGGATCAGCCTGCTCGATCTCGTCGCCGGGATCAACAAGATCTTGGGAACCACACTGGA
GCCCGAGTTCCACCCGACCCGCGAGGGGGACGTGCTCGATTCCCAGGCCAGCCTCGATCGCATCAAGGAGGTCTTGGGCT
ATCGCCCCTTGGTGGATTTCGAAGACGGCCTGCGCCGCACGCTGGATGCGACGCTCGAGGGACGCAACTGA

Protein sequence :
MKNPSLILVTGGAGFIGSHLVEALLNDGYRVRVVDNLATGHRSNLAHLEGRYEWLEGDLSDFEVCRRAVDGVEFVFHEAA
IPSVPRSVREPLPSHASGPTATLNMLEASRQAGVKRFMFAASSSAYGNTVELPKHEAMFPRPLSPYAVGKLAGEHYVSVY
AQTIGLDGVSLRYFNVFGPRQDPSSPYSGVISRFARLMSEGKRPTVNGDGSQTRDFTYVSNVVAANLAAMRSEKPLGGVV
LNVGTGGRISLLDLVAGINKILGTTLEPEFHPTREGDVLDSQASLDRIKEVLGYRPLVDFEDGLRRTLDATLEGRN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tviC NP_458739.1 Vi polysaccharide biosynthesis protein, epimerase Virulence SPI-7 Protein 4e-49 42
tviC NP_807944.1 VI polysaccharide biosynthesis epimerase Virulence SPI-7 Protein 4e-49 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sinac_3916 YP_007203839.1 nucleoside-diphosphate-sugar epimerase VFG0430 Protein 2e-49 42