Gene Information

Name : Sinac_3457 (Sinac_3457)
Accession : YP_007203410.1
Strain : Singulisphaera acidiphila DSM 18658
Genome accession: NC_019892
Putative virulence/resistance : Virulence
Product : Retron-type reverse transcriptase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4330046 - 4331299 bp
Length : 1254 bp
Strand : -
Note : PFAM: Group II intron, maturase-specific domain; Reverse transcriptase (RNA-dependent DNA polymerase)

DNA sequence :
ATGCCTGAAGCGAAGCCTTACGCGATTTCCAAACAGGTGGTCTACGAGGCCTACCTGAAGGTCAAGGCGAACCACGGGGC
GGCCGGGGTGGACGGGCAGTCGATCGAGGCGTTCGAGACCGACTTGAAGGGTAACCTCTACAAGATCTGGAATCGGATGT
CCTCGGGCAGCTACTTTCCACCGCCGGTGCGGCTCGTGGAGATCCCGAAAGCCGATGGGGGTTCAAGGCCGCTGGGGATT
CCCACGGTCGGCGATCGCGTGGCTCAGATGGTCGTCAAGATGCATCTGGAGCCGCTGGTGGAGCCGCACTTCCATCCCGA
CTCCTACGGGTATCGACCCGGACGATCGGCGCTGGATGCGGTGGCCGCCGCGCGGGAGCGGTGCTGGCGGTCCGACTGGG
TGATTGATCTGGATATCAAAGGTTTCTTTGACAATCTCGATCATGAACTAGTCATGAAGGCAGTCTGTCATCACGTGAAC
GAACCATGGGTCCTGCTGTACATCGAGCGGTGGCTGAAAGCCCCCGTTCAGAAGCAGGACGGTCGTCGAGAAGAGCGTAC
GAAGGGCTCGCCCCAGGGGTCGATTGTTTCGCCCTTGTTGGCCAATCTCTTCATGCACTATGCGTTCGATCTCTGGATGG
CCCGGAGCTTTCCGGACATCCACTTCGCGCGTTATGCGGACGATGTGATCATTCACGCGAAGAGCCGGGCTCAAGCGGAA
CACGTGCTCGAAGCGGTCCGGGCACGTCTGAAGGAGTGCCGTCTTGAGCTTCACCCTGAGAAGACCAAGATCGTGTACTG
CCAGGACGATGACCGGAGGGGCCAGCATGAACACATCAAGTTCGACTTCCTCGGCTACACCTTTCGGCCCCGGCGGGCCA
AGAATCGATGGGGGAAGTTCTTCGTGAGCTTCATCCCAGCGATCAGCCACAAGGCCGCCAATGCGATCCGCGAGACGATC
CGAGACTGGCGGCTGGCCGCCATCCGGAACAATCAGTCTCTGGAGGAGATCGCGGGGCTTGTGAATCCTTCGGTACGAGG
GTGGGTGAACTACTACGGTCGGTTTTACCGGTCGGCGCTCACTCCGGTTCTCCGACACCTGGAGCGTGTCTTGGTCAAAT
GGGCGCAGCGGAAATACAAACGGTTGAGGCGTCACTCCATCAACGCAGCCCACTGGCTGGGTCAAGTGGCGCGACGCGAT
CCGAATCTGCTGGTTCTCTGGCAGATCGGGATTCGACCAGCGACTGGATCATAA

Protein sequence :
MPEAKPYAISKQVVYEAYLKVKANHGAAGVDGQSIEAFETDLKGNLYKIWNRMSSGSYFPPPVRLVEIPKADGGSRPLGI
PTVGDRVAQMVVKMHLEPLVEPHFHPDSYGYRPGRSALDAVAAARERCWRSDWVIDLDIKGFFDNLDHELVMKAVCHHVN
EPWVLLYIERWLKAPVQKQDGRREERTKGSPQGSIVSPLLANLFMHYAFDLWMARSFPDIHFARYADDVIIHAKSRAQAE
HVLEAVRARLKECRLELHPEKTKIVYCQDDDRRGQHEHIKFDFLGYTFRPRRAKNRWGKFFVSFIPAISHKAANAIRETI
RDWRLAAIRNNQSLEEIAGLVNPSVRGWVNYYGRFYRSALTPVLRHLERVLVKWAQRKYKRLRRHSINAAHWLGQVARRD
PNLLVLWQIGIRPATGS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed ABR13526.1 reverse transcriptase Not tested PAGI-7 Protein 2e-118 54
unnamed CAD33771.1 putative reverse transcriptase Not tested PAI I 536 Protein 1e-81 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sinac_3457 YP_007203410.1 Retron-type reverse transcriptase VFG1512 Protein 7e-82 43