Gene Information

Name : Sinac_2112 (Sinac_2112)
Accession : YP_007202142.1
Strain : Singulisphaera acidiphila DSM 18658
Genome accession: NC_019892
Putative virulence/resistance : Virulence
Product : response regulator with CheY-like receiver domain and winged-helix DNA-binding domain
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2602875 - 2603576 bp
Length : 702 bp
Strand : -
Note : PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal

DNA sequence :
ATGAGCATTCGCGTCCTCATTATTGAAGACGAAACGAACATTTCCGACTTTCTGGTCCGCGGCCTCCGTGAGGAAGGGTT
CCTCGTTGACCACGCCGCGGACGGCCTGAGTGCCTGGCAAGCGCTACGGAACGGCACGTGGGACCTCGTTCTTCTCGATT
GGTGGCTGCCCGGCCAGGATGGATTGACTCTGCTCCAACGTTTCCGCCAGCATGATCGAACCACCCCGGTGCTCTTCCTC
ACGGCGCGCGACCAGGTTGAGCAGCGCGTGCTGGGGCTCGACAGCGGCGCCGACGACTATCTCTGCAAACCGTTCGATTA
CGAGGAGCTCCTGGCCCGGATCCGCGCCTTGATTCGCCGTCGTGAAACGGGAGGCGGCACAGTGGTCTCCTGGGGCGATC
TCACGGTGAACCTGGCCACGCAGAGAGCCGAGCGCGACGGCCACCCGCTCGACTTGACTGCCCGAGAACAGAGCCTGCTC
GTCTACTTCCTCCGGCACCCGGGGCAGGTTCTCTCGCGCACCCGGCTCTACGAGCACGTCTGGGACGATCGCCACGATGG
GATCTCGAAGACCTTGGAGGTTCACGTCATGGAACTCAGACGCAAACTCGAGGCCCACGGTCCCCGCGTCATCCATACCT
TGCGAGGTCGCGGTTACGTCCTCGATCACACGCCCCAGAGCTTACCCGGAGCGAAATCGTGA

Protein sequence :
MSIRVLIIEDETNISDFLVRGLREEGFLVDHAADGLSAWQALRNGTWDLVLLDWWLPGQDGLTLLQRFRQHDRTTPVLFL
TARDQVEQRVLGLDSGADDYLCKPFDYEELLARIRALIRRRETGGGTVVSWGDLTVNLATQRAERDGHPLDLTAREQSLL
VYFLRHPGQVLSRTRLYEHVWDDRHDGISKTLEVHVMELRRKLEAHGPRVIHTLRGRGYVLDHTPQSLPGAKS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 5e-28 42
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 4e-27 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sinac_2112 YP_007202142.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0638 Protein 2e-28 45
Sinac_2112 YP_007202142.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0083 Protein 3e-30 42
Sinac_2112 YP_007202142.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0197 Protein 1e-34 42
Sinac_2112 YP_007202142.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0125 Protein 5e-30 41
Sinac_2112 YP_007202142.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0308 Protein 7e-31 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sinac_2112 YP_007202142.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain VFG0473 Protein 4e-26 43
Sinac_2112 YP_007202142.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain VFG1702 Protein 2e-28 42
Sinac_2112 YP_007202142.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain VFG1563 Protein 3e-27 41