Gene Information

Name : C770_GR4pC1270 (C770_GR4pC1270)
Accession : YP_007193553.1
Strain :
Genome accession: NC_019848
Putative virulence/resistance : Virulence
Product : type III secretion apparatus lipoprotein, YscJ/HrcJ family
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1249683 - 1250483 bp
Length : 801 bp
Strand : -
Note : -

DNA sequence : 
ATGAAAATTTTCTGGCGGCCCTCAACGATCACGCGCGCGCTGACTCTCGCGCTCATGGTTCTGACGCTGCAGGCCTGCAG
CGTCGATCTTTACACCAATCTGGATGAGCGGGAGGCGAACGAGATGGTCGCCACGCTTCTATCGAAAGGCATAGCCGCCA
ACCGCGTCCTCCAGAAGGACGGTAAGCTGACGGTCACTGTAGACGAGGATCAATTCTCTCAGGCTGTCGCCTTGCTCAAT
ACGGCAGGCTTGCCGAAGGAGAGATTCGCAACGCTCGGCACCGTCTTCAAGCAGGAGGGGCTTGTAGCCTCGCCCGTGCA
GGAGCGGGCGCAGATGATCTATGCGCTGAGCGAGGAGCTCTCCCGGACCGTCTCGGAGATCGATGGCGTGCTAGCGGCGC
GCGTTCACGTTGTACTACCGGACAATGATCCATTGCAGCGCAACGCGATTCCCGCCTCAGCCTCTGTTTTCATCCGCCAC
GAAGCCGATCTTGACGTGAATCCGCTTATCCCGCGGATCAAGACTCTCGTTGCCAACAGCATATCGGGACTGAGCTACGA
GAAGGTCTCGGTAGTGCCGGTAGCGAGCCAGCGGACGAGCGAGCCCGCCATGGGCGCGGAACTCACCTCCTTCCTTGGCA
TGTGGATGCTGCCCGCGAGCGTCGCCAAGGCCAAACTCATCTTTGGCTGCCTGGCAGGTGCTCTGCTCGCCGCGATGGTA
AGCCTCGGTTATCTGGCGTGGCAAAAGCAAAGCAGGCGGCGGAAAGTCTATCCTCTGCAGCCATATGGTCCGGCAAAGTG
A

Protein sequence : 
MKIFWRPSTITRALTLALMVLTLQACSVDLYTNLDEREANEMVATLLSKGIAANRVLQKDGKLTVTVDEDQFSQAVALLN
TAGLPKERFATLGTVFKQEGLVASPVQERAQMIYALSEELSRTVSEIDGVLAARVHVVLPDNDPLQRNAIPASASVFIRH
EADLDVNPLIPRIKTLVANSISGLSYEKVSVVPVASQRTSEPAMGAELTSFLGMWMLPASVAKAKLIFGCLAGALLAAMV
SLGYLAWQKQSRRRKVYPLQPYGPAK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscJ AAO18027.1 LscJ Virulence TTSS locus Protein 6e-42 44
hrpB3 AAB08458.1 HrpB3 Virulence Hrp PAI Protein 4e-37 44
hrpB3 YP_198727.1 protein HrpB3 Virulence Hrp PAI Protein 9e-37 44
hrcJ YP_362160.1 HrcJ protein Virulence Hrp PAI Protein 5e-37 44
hrpB3 BAB07855.1 HrpB3 Virulence Hrp PAI Protein 7e-37 44
hrpB3 AAF61284.1 HrpB3 Virulence Hrp PAI Protein 7e-37 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
C770_GR4pC1270 YP_007193553.1 type III secretion apparatus lipoprotein, YscJ/HrcJ family VFG0409 Protein 5e-41 47
C770_GR4pC1270 YP_007193553.1 type III secretion apparatus lipoprotein, YscJ/HrcJ family VFG0218 Protein 8e-42 47