Gene Information

Name : C770_GR4pC1264 (C770_GR4pC1264)
Accession : YP_007193547.1
Strain :
Genome accession: NC_019848
Putative virulence/resistance : Virulence
Product : type III secretion apparatus protein, YscR/HrcR family
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1244879 - 1245529 bp
Length : 651 bp
Strand : -
Note : -

DNA sequence : 
ATGGGTGAGACGACCAATCTCATACCGATCATCATCATTGTATCGACGATCGGTCTTATTCCGCTCGCCGTGGTGACGAT
GACGGGATTCCTGAAAATCTCGATCGTCCTCTTCCTGATCCGCAACGCGCTTGGCATCCAGCAGTCGCCTCCCAATCTCG
TGCTCTATGGCGTCGCGTTGATCCTTACGGTCTATGTGACGACGCCGCTGGTCGGCGAGATGTACCGCACGCTCTCCAGC
GAGCCGGTCGACGTGCAATCGATCGATAGCATGATGCGGGCAGCGGACTCGCTGCGCGTGCCGCTACAGACGCATCTCAA
ACGCTATACCGACGAAAACGAGCGCCAGTTTTTCATGCAGGCGACGGAGCGAATATGGTCGGAGGAGGCCCGGGCCGAGG
TGAAGACCGACAGCCTGTTGATCCTCGTCCCGGCGTTCGTCAGTTCGGAGCTGACACGCGCCTTTGAAATCGGCTTCCTG
CTCTATCTGCCGTTCTTGGTCATTGATCTCATCGTCTCGACCGTGCTGATGGCGATGGGCATGATGATGGTGTCTCCAAC
ACTCATTTCAATTCCGCTGAAGATATTCCTCTTCGTCGCCGTCAACGGCTGGTCGCGGCTGATGCACGGCTTGATACTGA
GCTACGGATAG

Protein sequence : 
MGETTNLIPIIIIVSTIGLIPLAVVTMTGFLKISIVLFLIRNALGIQQSPPNLVLYGVALILTVYVTTPLVGEMYRTLSS
EPVDVQSIDSMMRAADSLRVPLQTHLKRYTDENERQFFMQATERIWSEEARAEVKTDSLLILVPAFVSSELTRAFEIGFL
LYLPFLVIDLIVSTVLMAMGMMMVSPTLISIPLKIFLFVAVNGWSRLMHGLILSYG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscR AAO18040.1 LscR Virulence TTSS locus Protein 2e-44 51
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 2e-42 47
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 1e-42 47
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 2e-41 47
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 2e-41 47
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 2e-41 47
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 7e-38 47
hrcR AAB06005.2 HrcR Virulence Hrp PAI Protein 5e-42 46
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 3e-43 45
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 3e-43 45
hrcR NP_791222.3 type III secretion protein HrcR Virulence Hrp PAI Protein 5e-38 45
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 2e-43 45
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 2e-43 45
escR AAK26700.1 EscR Virulence LEE Protein 1e-38 45
escR AAL57527.1 EscR Virulence LEE Protein 1e-38 45
escR CAC81847.1 EscR protein Virulence LEE II Protein 1e-38 45
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 5e-38 45
escR CAI43889.1 EscR protein Virulence LEE Protein 1e-38 45
escR AAC31528.1 L0049 Virulence LEE Protein 9e-39 45
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 2e-38 45
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 9e-39 45
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 2e-38 45
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 1e-38 45
escR AAC38369.1 EscR Virulence LEE Protein 1e-38 45
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 1e-38 45
unnamed AAL06354.1 EscR Virulence LEE Protein 2e-37 45
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 2e-42 44
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 2e-42 44
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 2e-43 44
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 5e-38 44
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 4e-38 44
hrcR AAG33884.1 HrcR Virulence Hrp PAI Protein 1e-38 44
hrcR ABQ88359.1 HrcR Virulence Hrp PAI Protein 2e-36 43
hrpW AAB05075.1 HrpW Virulence Hrp PAI Protein 2e-36 43
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 2e-37 43
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 1e-37 43
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 2e-37 43
spaP YP_217809.1 surface presentation of antigens protein SpaP Virulence SPI-1 Protein 6e-30 42
spaP NP_461811.1 surface presentation of antigens protein SpaP Virulence SPI-1 Protein 6e-30 42
escR AFO66317.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 2e-34 42
escR AFO66400.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 2e-34 42
spaP NP_457284.1 secretory protein (associated with virulence) Virulence SPI-1 Protein 1e-29 41
spaP NP_806493.1 surface presentation of antigens protein SpaP Virulence SPI-1 Protein 1e-29 41
ysaR AAS66846.1 YsaR Not tested SSR-1 Protein 7e-35 41
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 5e-37 41
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 5e-37 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
C770_GR4pC1264 YP_007193547.1 type III secretion apparatus protein, YscR/HrcR family VFG0044 Protein 1e-50 51
C770_GR4pC1264 YP_007193547.1 type III secretion apparatus protein, YscR/HrcR family VFG0188 Protein 2e-45 51
C770_GR4pC1264 YP_007193547.1 type III secretion apparatus protein, YscR/HrcR family VFG0394 Protein 2e-43 47
C770_GR4pC1264 YP_007193547.1 type III secretion apparatus protein, YscR/HrcR family VFG0827 Protein 4e-39 45
C770_GR4pC1264 YP_007193547.1 type III secretion apparatus protein, YscR/HrcR family VFG0715 Protein 6e-39 45
C770_GR4pC1264 YP_007193547.1 type III secretion apparatus protein, YscR/HrcR family VFG2455 Protein 2e-35 43
C770_GR4pC1264 YP_007193547.1 type III secretion apparatus protein, YscR/HrcR family VFG0519 Protein 7e-38 43
C770_GR4pC1264 YP_007193547.1 type III secretion apparatus protein, YscR/HrcR family VFG1773 Protein 1e-39 43
C770_GR4pC1264 YP_007193547.1 type III secretion apparatus protein, YscR/HrcR family VFG0551 Protein 2e-30 42
C770_GR4pC1264 YP_007193547.1 type III secretion apparatus protein, YscR/HrcR family VFG1259 Protein 4e-32 41