Gene Information

Name : C770_GR4pB210 (C770_GR4pB210)
Accession : YP_007192280.1
Strain :
Genome accession: NC_019847
Putative virulence/resistance : Virulence
Product : Type III secretory pathway, component EscR
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 169401 - 170054 bp
Length : 654 bp
Strand : +
Note : -

DNA sequence : 
ATGGAACACAGCTTTCCCCTAGCCCAGAGCCTTGCGGCGATGGTGGCGATTTCGGTTCTGCCGGTCATTGCCGTGGTGGC
CACGTCCTTTACCAGAATTTCCGTCGTGCTACTCATCGTGCGCAATGCGATCGGCATCCAGCAGACCCCGCCCAATCTGC
TGGTCTTTGCTATCGCCATCGTGCTTTCCGCTTTCGTCATGAACCCGGTTTTGCAGAGTTCATGGCAGCTACTGATTCTC
CATGGCGCCGATTTCAGCACTGTTGGAGGCATGGCCGACGGCATGGTCAAGGTTGGCGCTCCGTTAAAGGAGTTCATGAC
GAAATTCTCCGACGAAGAAGTCCGCGGCTTCTTCGTCGAGGCGTCACAAAAAATCTGGGTTGATGCGCCGACAATCCCCA
TCGCCTCCGACGACGTCACGATTCTGACACCCAGCTTTCTCGTCTCCGAGCTGACGCGCGCTTTCGAAGCCGGCTTTCTC
ATCTACCTTCCCTTCCTGATGATCGATTTCGCGGTCTCCGCAATACTTGTCGCGCTTGGCATGCAGATGATGTCGCCTAC
GGTCGTGTCGACCCCGATCAAACTTCTACTGTTCGTCTCGATCGACGGCTGGCGCCGTTTGCTGGAAGGATTGGTGCTGT
CCTATGCGAACTGA

Protein sequence : 
MEHSFPLAQSLAAMVAISVLPVIAVVATSFTRISVVLLIVRNAIGIQQTPPNLLVFAIAIVLSAFVMNPVLQSSWQLLIL
HGADFSTVGGMADGMVKVGAPLKEFMTKFSDEEVRGFFVEASQKIWVDAPTIPIASDDVTILTPSFLVSELTRAFEAGFL
IYLPFLMIDFAVSAILVALGMQMMSPTVVSTPIKLLLFVSIDGWRRLLEGLVLSYAN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscR AAO18040.1 LscR Virulence TTSS locus Protein 1e-37 44
hrcR AAB06005.2 HrcR Virulence Hrp PAI Protein 3e-38 43
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 6e-36 42
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 5e-36 42
hrcR NP_791222.3 type III secretion protein HrcR Virulence Hrp PAI Protein 1e-33 42
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 3e-37 42
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 3e-37 42
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 3e-37 42
hrpW AAB05075.1 HrpW Virulence Hrp PAI Protein 7e-33 42
hrcR AAG33884.1 HrcR Virulence Hrp PAI Protein 6e-34 42
hrcR ABQ88359.1 HrcR Virulence Hrp PAI Protein 7e-33 42
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 2e-38 42
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 3e-33 42
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 2e-33 42
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 5e-33 42
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 5e-33 42
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 3e-33 42
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 4e-34 42
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 4e-34 42
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 8e-36 41
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 8e-36 41
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 5e-36 41
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 5e-36 41
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 3e-36 41
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 4e-36 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
C770_GR4pB210 YP_007192280.1 Type III secretory pathway, component EscR VFG0044 Protein 2e-43 47
C770_GR4pB210 YP_007192280.1 Type III secretory pathway, component EscR VFG0188 Protein 2e-39 46
C770_GR4pB210 YP_007192280.1 Type III secretory pathway, component EscR VFG0394 Protein 5e-37 44
C770_GR4pB210 YP_007192280.1 Type III secretory pathway, component EscR VFG0519 Protein 1e-33 42