Gene Information

Name : C770_GR4Chr0500 (C770_GR4Chr0500)
Accession : YP_007189074.1
Strain : Sinorhizobium meliloti GR4
Genome accession: NC_019845
Putative virulence/resistance : Virulence
Product : Accessory colonization factor AcfC, contains ABC-type periplasmic domain
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 533981 - 534778 bp
Length : 798 bp
Strand : +
Note : -

DNA sequence : 
GTGCGAATTGCAGTTCTGATTGTTCTGACGACTGTCCTTGCCATGCCTGCTTCGGCGCAGGATACCGCACTCCATGACCC
TTCGATCAGCCGCGATGCACAGGACGGGGTGATCCGTCTTTACGGTGCGGGCGGTCCGGACACCGCCATCCGGAAAGTCG
CGGATGTCTGGACGAAGGAGACGGGCCGCAAGGTCGAAATCACCGCCGGACCGGAGAAGACATGGTCGAAAAAGGCGCAG
GGCGATGCGGATGTCATCTGGGGCACGTCCGAACAGGCGATGACCGCTTTTCTCGAAACCTATAAGGGCTTCTCATCGGA
TCAGGTCGAGCCGATATACCTTCGTCCGGCAGTCATTGCGGTGAAAGCGGGCAATCCCAAGGGGATCATGAAATTCGAGG
ACCTTCTGGCGGAAGGGACGAAAATCGTCGTAACCGAAGGAGCCGGCGTCGCCAACACGTCGGGGACGGGTGTGTGGGAG
GATATCGCGGGGCGTCTTGGCCGGCTGGAGGATGTCGCGGCCTTCCGCAGCAACATCGTCGCTTTCGAACAGGGCTCCGG
CGCAAGCTTCAAGGCGTTCAAAGCATTGGATGCAGACGCCTGGATCACCTGGCCGAATTGGCCGCTTTCGAACCCCGACA
CCCTGGAGGCGGTGCCGCTGTCGAGCGATCGCGCAATATGGCGCGACCTCAGCGTGGCCCTGGCCCCCGACGCCGATCCC
GATGCAAAGGCGTTTCTGGATTATCTGATCTCCGATGAGGCGCAGAAGATCATGTCCCGTGAAGGTTGGGTACGCTGA

Protein sequence : 
MRIAVLIVLTTVLAMPASAQDTALHDPSISRDAQDGVIRLYGAGGPDTAIRKVADVWTKETGRKVEITAGPEKTWSKKAQ
GDADVIWGTSEQAMTAFLETYKGFSSDQVEPIYLRPAVIAVKAGNPKGIMKFEDLLAEGTKIVVTEGAGVANTSGTGVWE
DIAGRLGRLEDVAAFRSNIVAFEQGSGASFKAFKALDADAWITWPNWPLSNPDTLEAVPLSSDRAIWRDLSVALAPDADP
DAKAFLDYLISDEAQKIMSREGWVR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
acfC AAK20768.1 accessory colonization factor AcfC Virulence VPI Protein 2e-36 44
acfC AAK20798.1 accessory colonization factor AcfC Virulence VPI Protein 2e-36 44
acfC AAA82706.1 AcfC Virulence VPI Protein 2e-36 44
VC0841 NP_230489.1 accessory colonization factor AcfC Virulence VPI-1 Protein 3e-36 44
acfC YP_001216322.1 accessory colonization factor AcfC Virulence VPI-1 Protein 3e-36 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
C770_GR4Chr0500 YP_007189074.1 Accessory colonization factor AcfC, contains ABC-type periplasmic domain VFG0105 Protein 1e-36 44
C770_GR4Chr0500 YP_007189074.1 Accessory colonization factor AcfC, contains ABC-type periplasmic domain VFG0839 Protein 3e-35 42