Gene Information

Name : Deipe_3223 (Deipe_3223)
Accession : YP_007182432.1
Strain : Deinococcus peraridilitoris DSM 19664
Genome accession: NC_019793
Putative virulence/resistance : Virulence
Product : ATP-dependent chaperone ClpB
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3233006 - 3235564 bp
Length : 2559 bp
Strand : -
Note : PFAM: AAA domain (Cdc48 subfamily); C-terminal, D2-small domain, of ClpB protein; Clp amino terminal domain; ATPase family associated with various cellular activities (AAA); TIGRFAM: ATP-dependent chaperone ClpB

DNA sequence :
ATGAACCCGGACCGTTTTACTGAAGCTGCACTCCAGGCGTTTACGGATGCCCAGGCCAGCGCACAGGGACGCGGGCACCA
GCAACTGATGCCCGCCCACCTGCTGCTCGCTTCGCTGACCGTAAATTCTCCTGCCGCGCGTGCACTTGCCCTGGCAGGCG
GTGAACTGGGCGCTGCCCGCTCGGCGCTCGAAGCGGAGCTTGCCAAACTTCCGCGCGTGCAGGGCTCCGACAACATGTAT
GTTGACGCCAGCGTTATGCGCGCCGTGAATGCTGCCGAGGAACTCGCCAGGCAGTTCGGCGACAGTTTCGTAGGGCTCGA
CACGCTGTTTCTGGCGATCCGGCAGGTCTACAAAGGCCCCGGTCTGCCAGATGAACGGGCCTTCAGACAGGCAATCGAGC
AACAACGAGGAGGCAAGAAAGTGGACAGCAAGACCGCTGAACAATCTTTTGACGCCCTGCAGAAATTCGGGCTGGACCTG
ACCGAGCGCGCCCGCGAAGGCAAACTCGACCCGGTCATCGGTCGTGACGAGGAAATCCGCCGGACCATGCAGATTCTGCT
GCGGCGCACCAAGAACAACCCGGTCCTGATCGGCGAGCCGGGCGTCGGCAAAACCGCCATCGCCGAAGGTCTGGCAGCCC
GCATCGTCAAAGGGGATGTTCCTGAAGGCCTCAGGAACAAGCGCATCGTCACGCTGCAGATGGGCAGCCTGCTTGCCGGC
GCAAAATATCGCGGTGAATTCGAGGAACGTCTCAAGGGCGTCATTCAGGAAGTCGTCGACAGCGCCGGCGAGGTGATTCT
GTTCATCGACGAGATTCATACCATCGTCGGTGCCGGCAAGGCAGAAGGCGCCGTCGACGCCGGGAACATGCTCAAGCCCG
CCCTGGCGCGCGGTGAGCTGCACCTGATCGGCGCAACCACCCTCGACGAGTACCGCGAAATTGAAAAGGACGCCGCACTG
GAGCGCCGTTTTCAGCCCGTAATGGTCGAGGAGCCCTCCGTCGAGGACACCATCTCGATTCTGCGCGGCATCAAAGAGCG
CTACCAGTTGCACCACAACGTCGAGATCACCGATCCCGCCTTGGTCGCCGCCGCGACGCTCAGCCAGCGTTATATCGCCG
ACCGTCAGCTTCCCGACAAGGCCATCGACCTGATCGACGAGGCCGCCGCGCGCCTGCGCATGGCGCTGGAATCGAGCCCC
GAACAGATTGACGCGCTGGAGCGGCGCAAACTACAGCTGGAAATCGAACGGCAGGCCCTGTCCAAGGAAAAAGACGAAGA
TAGCCAGCAACGCCTGATCGACATCGAGGACAGCCTGCGGGCCGTGACCGACGAGCTGGGCAGTTTGCGCGGCAAGTGGG
AAGCCGAACGTCATGAGTTGCACGATTTGCGAACCAAGCGCGAACAGCTTGACTCAGTGCGGACCCAGATCGAGCAGGCC
GAACGCGACTACGACCTCAGCAAGGCTGCCGAACTGCGCTACGGGCAACTGCCACAGCTCGAGCGCGAAGTGCAGGACTT
GGAAGCTCGGCTCAAGAACGCCGAATTCGCCCATCAGGAAGTCACCGATGAGGACATCGCCGCCATCGTGGCGCGCTGGA
CCGGCATTCCGGTCAGCCGCCTGATGGAAGGCGAGCGCGAGAAACTGCTGCGCCTGGAGCAGGAACTGCATCGCCGGGTC
ATCGGTCAGCACCGCGCCATCGTGTCGGTGGCGGACGCCATTCGCCGCTCACGCGCCGGCCTGAGCGATCCACGCCGCCC
CATCGGGTCGTTCATGTTCCTGGGGCCCACCGGCGTCGGCAAGACCGAGTTGGCCAAGGCGCTCGCCGCGTTTCTGTTCG
ATACCGAGGACGCCATGGTGCGTCTTGACATGAGCGAGTACATGGAGAAACACACCGTCGCACGCCTGATCGGGGCACCT
CCCGGATACGTCGGGTACGAGGAGGGCGGTCAGCTGACCGAAGCCGTGCGGCGCCGACCCTACAGCGTCATTCTGCTGGA
TGAGATCGAAAAGGCGCACCCTGACGTCTTCAACGTGCTGCTGCAGGTACTCGATGATGGACGCCTCACCGACGGCCAGG
GTCGCACGGTGGATTTCCGCAACAGCCTGGTCATCATGACGAGCAACATCGGCTCACCTCTCATCCTAGAAGCGCAGGCG
CGTGGTGACGACGCCGAGACAATTCGGAGCGCCGTGATGGGCGCCCTGTCACAGGCGTTCCGGCCCGAGTTTCTCAACCG
GGTGGACGACATCATCGTCTTCGACGCCCTGACCAGCGCTGACCTGCACCAGATCGTCGACATCCAGCTGCGTGGGCTGC
GTGAGCGCCTCGCCGAGCGCCGCGTGACGCTCCACCTGACGGACGCTGCGGTCAATCACCTGGCCGCCGTCGGTTACGAT
CCCAACTTTGGTGCCCGGCCCCTCAAGCGCGCCATCGGCCGCGAGATCGAAACGCCACTCGCGCGTGAGATCCTGAGCGG
CAAGCTGCCCGACGGCAGCGCCCTCACGCTCGATTATCAGGGCGGTCACCTCGTGTTCGAGAGCGCGCTCGTCAACTGA

Protein sequence :
MNPDRFTEAALQAFTDAQASAQGRGHQQLMPAHLLLASLTVNSPAARALALAGGELGAARSALEAELAKLPRVQGSDNMY
VDASVMRAVNAAEELARQFGDSFVGLDTLFLAIRQVYKGPGLPDERAFRQAIEQQRGGKKVDSKTAEQSFDALQKFGLDL
TERAREGKLDPVIGRDEEIRRTMQILLRRTKNNPVLIGEPGVGKTAIAEGLAARIVKGDVPEGLRNKRIVTLQMGSLLAG
AKYRGEFEERLKGVIQEVVDSAGEVILFIDEIHTIVGAGKAEGAVDAGNMLKPALARGELHLIGATTLDEYREIEKDAAL
ERRFQPVMVEEPSVEDTISILRGIKERYQLHHNVEITDPALVAAATLSQRYIADRQLPDKAIDLIDEAAARLRMALESSP
EQIDALERRKLQLEIERQALSKEKDEDSQQRLIDIEDSLRAVTDELGSLRGKWEAERHELHDLRTKREQLDSVRTQIEQA
ERDYDLSKAAELRYGQLPQLEREVQDLEARLKNAEFAHQEVTDEDIAAIVARWTGIPVSRLMEGEREKLLRLEQELHRRV
IGQHRAIVSVADAIRRSRAGLSDPRRPIGSFMFLGPTGVGKTELAKALAAFLFDTEDAMVRLDMSEYMEKHTVARLIGAP
PGYVGYEEGGQLTEAVRRRPYSVILLDEIEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNSLVIMTSNIGSPLILEAQA
RGDDAETIRSAVMGALSQAFRPEFLNRVDDIIVFDALTSADLHQIVDIQLRGLRERLAERRVTLHLTDAAVNHLAAVGYD
PNFGARPLKRAIGREIETPLAREILSGKLPDGSALTLDYQGGHLVFESALVN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
aec27 YP_851418.1 ATPase Not tested PAI II APEC-O1 Protein 2e-102 43
aec27 AAQ96721.1 Aec27 Not tested AGI-1 Protein 1e-102 43
STY0294 NP_454876.1 ClpB-like protein Not tested SPI-6 Protein 4e-103 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Deipe_3223 YP_007182432.1 ATP-dependent chaperone ClpB VFG2084 Protein 1e-103 43