Gene Information

Name : Deipe_4310 (Deipe_4310)
Accession : YP_007174100.1
Strain :
Genome accession: NC_019789
Putative virulence/resistance : Virulence
Product : Mn/Zn ABC transporter ATPase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 482244 - 482999 bp
Length : 756 bp
Strand : -
Note : PFAM: ABC transporter

DNA sequence : 
ATGACCGCCACTGCCCATACCGCCCCGCTGGCCGTCCGTGACCTGACCGTCGCGTACCACGAAACACCTGTTCTGTGGGA
CATCGACCTCGAGTTCCCCGCCGGGCAGCTGTGCGCCATCGTCGGTCCGAACGGCGCGGGGAAAAGTACGTTTCTCAAAG
CCGTGCTGGGTCTGCTCCCGAAAGCCGCAGGAACCGTGCGCTTCTTCGGCGAGCCGCTCAAGAACGCGCGACACCGCGTC
GGGTACGTCCCGCAGCGCACCAGCGTCGACTGGGACTTTCCCACCGACGCCCTGGATGTGGTGATGATGGGCCTCTACGG
GCGACTCGGCTGGATCCGCCGTCCCGGCAGGCGCGAACGCGAACTGGCCATGCAGGCCCTCGAGCGCGTCCGCATGACCG
ATTTCGCCCAGCGGCAGATCTCGCAGCTTTCGGGCGGGCAGCAGCAGCGCGTCTTCCTCGCCCGCGCCCTCGCCCAGGAC
GCCGACGTGTACTTCATGGACGAACCCTTCGCGGGCGTGGACGCCACCACCGAGCGGGCCATTCTGGACGTCATGCGCGA
CCTTCAGGGTCAGGGAAAGACCGTGGTCGTGGTGCACCACGACCTCGACACCGTACGCGAGTACTTCGATCACGTCTCGC
TCCTGAACGTCAGCGTGATCGCCAGCGGCCCCATCCAGACAGCCTTCACCCCAGAACTGCTGCGCAAAACCTACGGCGGA
AAAGTCGCTTTCCTGAGAGAGGCGACACCCGCATGA

Protein sequence : 
MTATAHTAPLAVRDLTVAYHETPVLWDIDLEFPAGQLCAIVGPNGAGKSTFLKAVLGLLPKAAGTVRFFGEPLKNARHRV
GYVPQRTSVDWDFPTDALDVVMMGLYGRLGWIRRPGRRERELAMQALERVRMTDFAQRQISQLSGGQQQRVFLARALAQD
ADVYFMDEPFAGVDATTERAILDVMRDLQGQGKTVVVVHHDLDTVREYFDHVSLLNVSVIASGPIQTAFTPELLRKTYGG
KVAFLREATPA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ef0093 AAM75296.1 EF0093 Not tested Not named Protein 2e-42 44
EF0575 NP_814340.1 cationic ABC transporter ATP-binding protein Not tested Not named Protein 3e-42 44
sitB NP_457256.1 Iron transport protein, ATP-binding component Virulence SPI-1 Protein 3e-44 43
sitB NP_806465.1 iron ABC transporter ATP-binding protein Virulence SPI-1 Protein 3e-44 43
sitB NP_461783.1 ATP-binding protein Virulence SPI-1 Protein 5e-45 43
sitB AAD41066.1 SitB Virulence centisome 63 pathogenicity island Protein 4e-45 43
sitB YP_217782.1 iron transporter: fur regulated Virulence SPI-1 Protein 1e-44 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Deipe_4310 YP_007174100.1 Mn/Zn ABC transporter ATPase BAC0400 Protein 2e-67 62
Deipe_4310 YP_007174100.1 Mn/Zn ABC transporter ATPase BAC0440 Protein 9e-47 44
Deipe_4310 YP_007174100.1 Mn/Zn ABC transporter ATPase BAC0350 Protein 2e-45 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Deipe_4310 YP_007174100.1 Mn/Zn ABC transporter ATPase VFG0526 Protein 2e-45 43