Gene Information

Name : Deipe_4250 (Deipe_4250)
Accession : YP_007174053.1
Strain :
Genome accession: NC_019789
Putative virulence/resistance : Unknown
Product : transposase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 418432 - 419256 bp
Length : 825 bp
Strand : -
Note : PFAM: Integrase core domain

DNA sequence :
GTGGAACTGATGTGCGAGGTGCTGGAGGTCAGTCTGAGCGGCTATTACGCCTGGCGGAGAAGGCCGGAGTGCAATCGAGT
GCAAAAAGACCGTGTATTGACGGCAAAAATCATCACTTACCATCAGCGGAGCCGGGAAACGTACGGGACACCCCGGATCA
AGGAAGACCTGGCCGAAGAGGGACTCATGGTCAGCCGCCAACGAATCGGGCGCCTGATGAAGGCAGCCAAACTCCAGGTT
CGCTGCAAGCGAAAGTTCCGCACCACCACGAAGTCAAAACACACCCACCCAGTCGCGGAGAACGTGTTGGACCGCGATTT
CAAGGCGAACGGCCCGAACCAGAAGTGGGTGACGGACATCACCTACCTTCCCACGACAGAGAGCTGGTTGTATTTGGCCA
CCGTGATGGATCTGTACTCAAGGCGAATTGTCGGTTGGTCTCTGAACGAGCGTCTCCACACGCCGCTGGTCATCGACGCG
CTCAACATGGCCAGACAGCGGAGGAACCCTGGGGCAGGGTTGCTCCACCACTCGGACCGGGGGAGTCAATACGCCAGCGA
CGCGTACTGGCAAGCCTTGGAGCGCTTGGCAGCCGTGCAGAGCATGAGCAACAAAGGGGAGTGTTGGGATAATGCTGTGC
AGGAAAGCTTTTTCGCCACCTTGAAGACGGAACTTGATCTTCGGCAGGCCCGTGGAACTCGCGCCCAGACGCGCAGTGAG
GTGTTCGAGTGGATTGAGGTGTTTTATAACCGGCTACGTCGTCATTCATCGCTCGGCTACCGCTCGCCGGTGGCCTTCGA
GGAGCAAGCCCTCAGCATGAACTGA

Protein sequence :
MELMCEVLEVSLSGYYAWRRRPECNRVQKDRVLTAKIITYHQRSRETYGTPRIKEDLAEEGLMVSRQRIGRLMKAAKLQV
RCKRKFRTTTKSKHTHPVAENVLDRDFKANGPNQKWVTDITYLPTTESWLYLATVMDLYSRRIVGWSLNERLHTPLVIDA
LNMARQRRNPGAGLLHHSDRGSQYASDAYWQALERLAAVQSMSNKGECWDNAVQESFFATLKTELDLRQARGTRAQTRSE
VFEWIEVFYNRLRRHSSLGYRSPVAFEEQALSMN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAB86997.1 hypothetical 31 KD protein Not tested SHI-1 Protein 5e-55 49
hp1 AAC61713.1 Hp1 Not tested PAI I CFT073 Protein 5e-55 49
unnamed AAF09022.1 unknown Not tested SHI-O Protein 2e-55 49
Z1134 NP_286669.1 hypothetical protein Not tested TAI Protein 8e-55 49
Z1573 NP_287077.1 hypothetical protein Not tested TAI Protein 8e-55 49
c3575 NP_755450.1 transposase insF Not tested PAI I CFT073 Protein 7e-55 49
unnamed AAF09030.1 unknown Not tested SHI-O Protein 5e-55 49
tnpI AAD44751.1 TnpI Not tested SHI-2 Protein 5e-55 49
unnamed AAQ07468.1 TnpI-like protein Not tested Not named Protein 1e-53 48
tnpA1133 ACK44540.1 TnpA Not tested SGI1 Protein 2e-53 47
orfB AGK07032.1 IS1133 transposase; OrfB Not tested SGI1 Protein 2e-53 47
orfB AGK07090.1 IS1133 transposase; OrfB Not tested SGI1 Protein 2e-53 47
unnamed AAL57581.1 transposase 1 Not tested LEE Protein 1e-41 43
unnamed AAL57519.1 transposase 1 Not tested LEE Protein 5e-42 43
insF CAC43414.1 transposase of insertion element IS3 Not tested PAI III 536 Protein 1e-40 42
ECO111_3732 YP_003236068.1 putative IS3 transposase InsF Not tested LEE Protein 4e-41 42
tnpB CAB61574.1 transposase B Not tested HPI Protein 1e-35 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Deipe_4250 YP_007174053.1 transposase VFG1706 Protein 3e-55 49
Deipe_4250 YP_007174053.1 transposase VFG1631 Protein 8e-41 42