Gene Information

Name : Deipe_3850 (Deipe_3850)
Accession : YP_007173719.1
Strain :
Genome accession: NC_019789
Putative virulence/resistance : Virulence
Product : Fe3+-siderophore ABC transporter permease
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 20918 - 21928 bp
Length : 1011 bp
Strand : +
Note : PFAM: FecCD transport family

DNA sequence : 
ATGAAAAGCACCCCACTCGACCAACTAAGGCGCACCATCGCGCTGCTGCCTTTGCTCAGCGTCCTGCTGCTCAGCGTGAG
CGTCCTCGCGCTCGGGCTCGGCGCGGTCCGCACCCCACCCACCGAGGTGCTGCGCGTCCTCACGGGCGGCGGCGATGAAC
TCACCACGCGCATCCTGCTCGAATTGCGCCTGCCGCGCATCCTCGTCGGCGCCCTCACCGGGGCGATGTTCGCCGCGAGT
GGCACCGTCATGCAGGGCGTCATCCGCAACCCGCTCGCCAGCCCCGACCTGGTCGGTGTCAGCGCCGGTGCCGGACTTGC
CGCGACCATTTTGCTACTGCTCGTACCGAGCGCACCCACCTGGGCGCTCCCTTGGGGCGCGTTCCTCGGTGCATGGCTCG
GCTTCGCCGCCGTGTACCTCCTCGCCCGCAAGGGTGGCCGCGTTGCCCCCGTCCGCCTCGCCTTGATCGGCGTCGCCGTC
GCCGCCGCCCTCGGCGCCACGCAGAACCTCATCCTCATTCGCGCTCCCGATGGGATCGGCGGCGCCCTCGCGTTTCTCAC
CGGTACTATCTACGGCGCCGACTGGGAACGCCTCACGCGCGTCCTTCCCTGGGCGCTTATCCTGCTCCCACTCAGCCTGC
TCATCACGCGCCGCCTCGACGTCCTCGCGTTCGGCGAGCAGGTCGCCACCAGCCTCGGCATCCGCGTCGAACTCGCGCGC
GGCCTCGCCCTCACCATCGCTGTCGGCCTCGCTGGCGCCGCCGTCACCGGTAGCGGCATTCTCGGCTTCGTCGGGCTGCT
CGCCCCGCACCTCGCGCGTCTCCTCGTCGGCGGACTGCATGCCCGCCTGCTGCCCGTCGCCCTGCTGCTCGGCGCGATTC
TTGTGATCGGTGCGGATACCCTGGGTCGTGCTCTCCTCCCACCCATCGAGATTCCCGCTGGGATCCTCACCACCCTGATT
GGCGCGCCGTACTTCCTGTGGTTGCTGCGCCGCTCCGCCCGCACTTCGTAA

Protein sequence : 
MKSTPLDQLRRTIALLPLLSVLLLSVSVLALGLGAVRTPPTEVLRVLTGGGDELTTRILLELRLPRILVGALTGAMFAAS
GTVMQGVIRNPLASPDLVGVSAGAGLAATILLLLVPSAPTWALPWGAFLGAWLGFAAVYLLARKGGRVAPVRLALIGVAV
AAALGATQNLILIRAPDGIGGALAFLTGTIYGADWERLTRVLPWALILLPLSLLITRRLDVLAFGEQVATSLGIRVELAR
GLALTIAVGLAGAAVTGSGILGFVGLLAPHLARLLVGGLHARLLPVALLLGAILVIGADTLGRALLPPIEIPAGILTTLI
GAPYFLWLLRRSARTS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fecD AAL08452.1 FecD Virulence SRL Protein 2e-14 44
DIP0584 NP_938960.1 iron transport system membrane protein Virulence Not named Protein 8e-12 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Deipe_3850 YP_007173719.1 Fe3+-siderophore ABC transporter permease BAC0163 Protein 1e-14 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Deipe_3850 YP_007173719.1 Fe3+-siderophore ABC transporter permease VFG1043 Protein 1e-14 44