Gene Information

Name : Deipe_4038 (Deipe_4038)
Accession : YP_007173877.1
Strain :
Genome accession: NC_019789
Putative virulence/resistance : Unknown
Product : transposase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 190367 - 191176 bp
Length : 810 bp
Strand : +
Note : PFAM: Integrase core domain

DNA sequence :
GTGTCGAGTATTCGGGTGACCATCAGCGGCTACTACACCTGGCGAGGAAGGCCAGCGTCGCGACACGCCCTGCGAGACGA
AGCCCTCTCTTTGCGGATCAAAGCACTGCACGAGCAGTACAAGGGCCGCTATGGCGCTCCCCGCCTGCACGTCGAACTCA
CCGAAGAGGGCTTGAAGTGCAGCAAGAAGCGCGTGGCTCGTCTGATGCGGACGGCAGGTCTACGGGCGAAAGGCAAGCGC
AAGCATGTTGTCACCACCGACAGCAATCACGAACTGGCTGTGGCAGAGAATCTGCTGCAACGCGACTTCCAGCCAGAGCA
GCCCAACCAGGTGTGGGCGGCAGATCTGACGTACATTCCCACCAAAGAAGGCTGGTTGTACCTGGCGGTGGTGTTGGACT
TGTACTCCAGGTTAATCGTGGGGTGGTCGATGAACGACCGCATGCCTGCCGAGCTGCCGGTGGCGGCCTTGCAGATGGCT
GTCCAGCGCCGTTCCCCACCTCCAGGGCTGATTCATCACAGCGACAGAGGAAGCCAGTACGCCAGTGGCCTCTTCCAGGC
TGAACTCCAGCGGATCGGAGCGCAAGCCAGCATGAGTCGGAAGGGAGATTGCTGGGACAATGCCTGCGTCGAGAGCTTTT
TCGCCACCCTCAAGCGGGAACTGCTGGACGGTGAACCCTTTGAGTCGCGCGAAGCCGCCAGGGCAGCGATCTTCTCGTAC
CTGGAGGTGTTCTACAACCGTCAGCGCCGCCATTCGACCCTCGGCTACTTGACACCACACCAAGCCGACCGCCATGCTCA
AGCCGCTTAA

Protein sequence :
MSSIRVTISGYYTWRGRPASRHALRDEALSLRIKALHEQYKGRYGAPRLHVELTEEGLKCSKKRVARLMRTAGLRAKGKR
KHVVTTDSNHELAVAENLLQRDFQPEQPNQVWAADLTYIPTKEGWLYLAVVLDLYSRLIVGWSMNDRMPAELPVAALQMA
VQRRSPPPGLIHHSDRGSQYASGLFQAELQRIGAQASMSRKGDCWDNACVESFFATLKRELLDGEPFESREAARAAIFSY
LEVFYNRQRRHSTLGYLTPHQADRHAQAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hp1 AAC61713.1 Hp1 Not tested PAI I CFT073 Protein 3e-56 51
Z1134 NP_286669.1 hypothetical protein Not tested TAI Protein 5e-56 51
Z1573 NP_287077.1 hypothetical protein Not tested TAI Protein 5e-56 51
c3575 NP_755450.1 transposase insF Not tested PAI I CFT073 Protein 4e-56 51
unnamed AAL57519.1 transposase 1 Not tested LEE Protein 6e-54 51
unnamed AAL57581.1 transposase 1 Not tested LEE Protein 1e-53 51
ECO111_3732 YP_003236068.1 putative IS3 transposase InsF Not tested LEE Protein 2e-53 51
insF CAC43414.1 transposase of insertion element IS3 Not tested PAI III 536 Protein 4e-51 50
unnamed AAQ07468.1 TnpI-like protein Not tested Not named Protein 7e-55 50
unnamed AAF09022.1 unknown Not tested SHI-O Protein 3e-55 50
unnamed AAF09030.1 unknown Not tested SHI-O Protein 4e-56 50
tnpI AAD44751.1 TnpI Not tested SHI-2 Protein 4e-56 50
unnamed AAB86997.1 hypothetical 31 KD protein Not tested SHI-1 Protein 4e-56 50
tnpA1133 ACK44540.1 TnpA Not tested SGI1 Protein 2e-49 46
orfB AGK07032.1 IS1133 transposase; OrfB Not tested SGI1 Protein 2e-49 46
orfB AGK07090.1 IS1133 transposase; OrfB Not tested SGI1 Protein 2e-49 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Deipe_4038 YP_007173877.1 transposase VFG1706 Protein 2e-56 51
Deipe_4038 YP_007173877.1 transposase VFG1631 Protein 2e-51 50