Gene Information

Name : Dacsa_3208 (Dacsa_3208)
Accession : YP_007173086.1
Strain : Dactylococcopsis salina PCC 8305
Genome accession: NC_019780
Putative virulence/resistance : Virulence
Product : ATP-dependent chaperone ClpB
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3304128 - 3306755 bp
Length : 2628 bp
Strand : -
Note : PFAM: AAA domain (Cdc48 subfamily); C-terminal, D2-small domain, of ClpB protein; Clp amino terminal domain; ATPase family associated with various cellular activities (AAA); TIGRFAM: ATP-dependent chaperone ClpB

DNA sequence :
ATGCAACCGACGAATCCCAACCAGTTTACGGAAAAGGCTTGGGAAGCGATCGTGCGACTTCCTGAAATTGCCAAGCAAAA
CCAACAGCAACAAATCGAAAGTGAGCATTTACTAAAATCTCTATTAGAACAAGATGGGTTAGCCAGCAGTGTTTTTAGTA
AGGCTGATGTCAGTGTTCAACGCTTGCGCGATCGAGCGGACGAGTTTATTGCTCAACAGCCGAAGATTTCCAACACAGGA
GGATCGATTTATTTAGGACGAAGTTTAGATACACTGCTCGATCGAGCGGAGAAATTTCGTCAAAGTCTCGAAGACGAATA
TATTTCCATTGAACATCTCATCCTTGCTTTCGCTGACGACGATCGATTCGGAAAAGCATTGTACAAGGAATTTGGACTCA
ATGAAAAAAGACTAAAAACAGTGATTAAAGATATTCGCGGTTCACAAAAAGTAACAGACCAAAACCCAGAAAACAAGTAT
GAGGCGTTAGAAAAATATGGACGCGACTTGACAGCATGGGCGAGAGAAGGGAAACTTGATCCCGTGATTGGACGGGATGA
TGAAATTCGGCGTACAGTACAGATTTTATCCCGTCGCACCAAAAATAATCCTGTGTTAATCGGGGAACCTGGCGTGGGAA
AAACCGCCATTGTGGAAGGATTAGCCCAAAGAATTGTTAGTCGAGATGTTCCCGAATCCCTGCGCGATCGAAAATTATTC
GCCCTTGATTTAGGTTCATTAGTCGCAGGGGCAAAATATCGCGGTGAGTTTGAAGAACGTCTCAAAGCCGTCTTAAAAGA
AGTCACCGAAGCAGCAGGTCAGATCATCATGTTTATTGATGAGATTCACACCGTTGTTGGTGCTGGTGCAACTCAAGGCG
CAATGGATGCTGGTAACTTATTAAAACCGATGTTAGCGCGGGGAGAATTGCGCTGTATTGGCGCGACAACCCTTGATGAG
TACCGTCAGCACATTGAAAAAGATGCGGCGTTAGAACGGCGTTTTCAAGCGGTGTATGTGGACGAACCGAATGTCACCGA
TACGATTTCAATTTTACGGGGTTTGAAGGAACGTTACGAAGTGCATCATGGGGTTAAAATTGCCGATCGATGCCTGGTGG
CGGCGGCGATGTTGTCCGATCGCTATATTAGCGATCGATATCTTCCCGACAAAGCGATCGACCTAGTGGATGAATCTGCC
GCGAAACTGAAAATGGAAATCACCTCGAAACCCGAAGAACTCGACGAGATCGATCGCAAAATTTTACAATTGGAAATGGA
GCGTCTCTCGTTACAAAAAGAAGAAGACACCACCTCCAAAGAACGTCTTGAAACCCTAGAGAAAGAACTGGCTAATCTCA
AAGAAGAACAAGACGAACTCAACGCCCAATGGCAAGCGGAAAAAGAAGTCATTGATCAGATTCGCAGCATCAAAGAAACG
ATCGATCAAGTCAACCTTGAAATCCAACAAGCGGAACGAGATTATGATCTTAATCGGGCTGCCGAATTACGTTATGGACG
CTTAACCGAACTGCAACGACAGCGCCAAGAAGCAGAAAACAAACTTGAAGAAATGCAAAGCAGTGGACATACCCTGTTAC
GAGAAGAAGTCGCCGAAGCAGATGTGGCGGAAATTATCTCGAAATGGACAGGGATTCCGATTAGTAAATTAATGGCTTCG
GAAAAAGAGAAACTGTTACATTTAGAAGACGAACTGCACGATCGCGTCGTTGGACAAGAAGAAGCCGTCCGTGCTGTTGC
AGAAGCAATTCAACGGTCTCGCGCGGGATTAGCTGATCCCAATCGTCCTACTGCGAGTTTTATTTTCCTCGGACCCACTG
GCGTTGGCAAAACCGAGTTGGCGAAAGCATTAGCGTCTAACCTCTTCGACACCGAAAACGCCTTAGTGCGAGTAGATATG
TCGGAATACATGGAGAAACACGCCGTTTCTCGTCTCGTTGGTGCCCCTCCAGGTTATGTCGGTTACGAAGAAGGCGGACA
ACTCACCGAACCCATCCGCCGTCGTCCCTATTCTGTGATTCTTTTTGATGAAATTGAGAAGGCGCATCCCGATGTATTTA
ACATCATGTTACAAATTTTAGATGATGGTCGCCTGACTGACTCACAAGGGCGAGTGGTGGACTTCAAGAACACCATTATC
ATTATGACCAGTAACATTGGGTCAGATTTGATTTTAGATGTGTCTGGAGACGATTCTCGCTATGATGAGATGTACAATCG
CGTCATGGGTGCGATGCGAGAAAACTTCCGTCCTGAGTTCCTCAACCGCATTGATGAAATTATTATCTTCCATGCTTTGC
AGAAAGCACAGTTACGGGAGATTGTCAGATTACAAACGCAGTATCTCGAAGATCGTCTCAGCGAACAAAAACTGTCTTTG
AAATTGTCCCAAGAGGCTCTAGACTATTTAGCAGAGATTGGCTACGATCCTGTTTATGGGGCGCGTCCTCTCAAACGTGC
GGTACAACGTTATGTGGAAACTCCGATCGCAAAATCTCTGTTAAGAGGAGAGTTTAGTGAGGGCGATAGCCTCTTGGGGG
ATGTGGAAGATGAACGGTTGACGTTTAAGCGTTTACCAGTGGAAATGATGACGATTGTGCCAAATTAG

Protein sequence :
MQPTNPNQFTEKAWEAIVRLPEIAKQNQQQQIESEHLLKSLLEQDGLASSVFSKADVSVQRLRDRADEFIAQQPKISNTG
GSIYLGRSLDTLLDRAEKFRQSLEDEYISIEHLILAFADDDRFGKALYKEFGLNEKRLKTVIKDIRGSQKVTDQNPENKY
EALEKYGRDLTAWAREGKLDPVIGRDDEIRRTVQILSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVSRDVPESLRDRKLF
ALDLGSLVAGAKYRGEFEERLKAVLKEVTEAAGQIIMFIDEIHTVVGAGATQGAMDAGNLLKPMLARGELRCIGATTLDE
YRQHIEKDAALERRFQAVYVDEPNVTDTISILRGLKERYEVHHGVKIADRCLVAAAMLSDRYISDRYLPDKAIDLVDESA
AKLKMEITSKPEELDEIDRKILQLEMERLSLQKEEDTTSKERLETLEKELANLKEEQDELNAQWQAEKEVIDQIRSIKET
IDQVNLEIQQAERDYDLNRAAELRYGRLTELQRQRQEAENKLEEMQSSGHTLLREEVAEADVAEIISKWTGIPISKLMAS
EKEKLLHLEDELHDRVVGQEEAVRAVAEAIQRSRAGLADPNRPTASFIFLGPTGVGKTELAKALASNLFDTENALVRVDM
SEYMEKHAVSRLVGAPPGYVGYEEGGQLTEPIRRRPYSVILFDEIEKAHPDVFNIMLQILDDGRLTDSQGRVVDFKNTII
IMTSNIGSDLILDVSGDDSRYDEMYNRVMGAMRENFRPEFLNRIDEIIIFHALQKAQLREIVRLQTQYLEDRLSEQKLSL
KLSQEALDYLAEIGYDPVYGARPLKRAVQRYVETPIAKSLLRGEFSEGDSLLGDVEDERLTFKRLPVEMMTIVPN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
aec27 AAQ96721.1 Aec27 Not tested AGI-1 Protein 1e-99 41
aec27 YP_851418.1 ATPase Not tested PAI II APEC-O1 Protein 2e-99 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Dacsa_3208 YP_007173086.1 ATP-dependent chaperone ClpB VFG2076 Protein 9e-112 44