Gene Information

Name : Dacsa_2739 (Dacsa_2739)
Accession : YP_007172671.1
Strain : Dactylococcopsis salina PCC 8305
Genome accession: NC_019780
Putative virulence/resistance : Virulence
Product : ATP-dependent chaperone ClpB
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2809346 - 2812030 bp
Length : 2685 bp
Strand : +
Note : PFAM: AAA domain (Cdc48 subfamily); C-terminal, D2-small domain, of ClpB protein; Clp amino terminal domain; ATPase family associated with various cellular activities (AAA); TIGRFAM: ATP-dependent chaperone ClpB

DNA sequence :
ATGCAGCCCACCGACCCGAGCAAGTTTACGCAACAAGCCTGGGATGTCATTGTTGATTCACAAGAAGTCGCCCGTCGCTT
TAAAAACCAAGAGTTAGAAGTGGAACATTTGATGCTTACCCTATTTTCCACGGAAGGGGTAGCCAATCAGATTCTAGAAG
CTAAAAAAATTGATGTGTCTCGTCTTCAGCAACAGCTAGAAGTGTTCACCAACCGCCAACGCAAATCCATGCGGGTTGAA
CAATTGTATCTGGGACGAGGACTGGATCAACTACTCGATCGCGCCGAAAAAGCAAGACAAAGTTGGGAAGATGAGGTGAT
CGGTGTCGAACATCTTTTGTTAGGCTTTGCGGAAGACGATCGTGTTGGTCGTCGCGTATTACGTCCCTACAGCGTTGATC
CGCAAGACATTGAAGCCGCAATTAAAGAATTTCGCGCCAATCGTCCCCCAGACCAAGAAAGCGCAGCGGAAGGGGAACAA
GAGAAGGAAAAAGAAGAGGAACAAACCCCCCTCGAAAAATATGGGCGTGATCTCACCGAACAAGCAAGTGGGGGAAAACT
TGACCCTGTAATTGGTCGCGATGAGGAAATTCGTCGCGTGGTACAAGTCTTGTCCCGTCGTTCTAAGAATAATCCTGTTT
TAATTGGTGAACCAGGAGTGGGAAAAACCGCCATTGCGGAAGGATTAGCGCAGCGAATTGTTAACGGTGATGTTCCCGAC
TCCCTGAAAAACCGCAGTTTAATCGCTTTAGATATGGGGAGTTTAATCGCTGGTGCAAAATATCGCGGTGAATTTGAAGA
TCGGCTTCGCAAGGTGTTACATGAGGTGACTCATTCCGAAGGACAAATTGTTCTCTTTATTGATGAATTACAAACCGTTG
TGGGAACAGGTTCCGGTCAAGGAACAATGGACGCAGGGAATTTATTAAAACCAATGTTAGCGCGGGGAGAATTACGCTGT
ATCGGTGCGACAACTTTAGACGAATATCGGAAACACATCGAAAAAGACCCCGCGTTAGAACGGCGATTTCAACAGGTTTA
TGTGAAACAACCTGATGTGGAAGCAACGGTTTCGATTTTACGTGGCTTGAAAGAACGTTATGAAGTCCATCATGGGGTAA
AAATTACCGACTCCGCATTAGTGGCGGCGGCGAGTTTATCTGATCGTTACATAACTGAACGTTTTTTACCCGATAAGGCG
ATCGATCTCGTGGATGAGGCGGCAGCAAAATTAAAAATGGAGATTACCTCCAAACCTACCGAATTGGAAAGCATCGATCG
ACGTTTGATGCAATTACAGATGGAGAAACTCTCGTTGGAAGGAGAAGACGAATTAGCGAAAAATAATTCCAGCGCTTATC
GTTCCGCAAAAGAACGTCTAGAGAAAATTCAACAGGAAATGGAGGAACTGGAAAGTAGCCAGAAAGAATTATCTTCCCAA
TGGCAATCAGAAAAACAGATGTTAGAAGAAATTAATGCCTTGAAAGAAGAAGAAGATCAGCTACGAGTACAAGTAGAACA
AGCGGAACGAGAATATGATCTCGAAAAAGCGGCGCAGTTGAAGTATGGACAATTAGAAGGATTACAACGCCAACGGGAAA
ATAAAGAAAGTAAATTATTAGATATGCAGTCTCAAGGGCGAACCTTGCTGCGGGAACAGGTGACAGAATCGGATATAGCG
GAAATCGTCGCTAAATGGACGAGTATTCCCGTTAATCGCTTGTTAGAGTCGGAACGACAGAGACTGTTAGGATTAGAAGG
CTATTTACACGAACGGGTTATCGGTCAAAAAGAGGCAGTTTCCGCCGTTTCTGCTGCCATTCGTCGCGCTAGGGCTGGAA
TGAAAGACCCCGCACGTCCGATCGGTTCTTTCTTGTTTATGGGACCCACTGGCGTTGGCAAAACCGAACTCGCCCGCGCT
ATGGCAGAATTTCTATTCGATACAGAAGAATCATTGATTCGCATTGATATGTCCGAATATATGGAGAAACATTCCGTTTC
CCGTTTAGTCGGCGCACCCCCTGGCTATGTCGGCTATGAAGAAGGGGGACAACTTTCGGAACAGATTCGCCGTCGTCCTT
ATTCTGTGGTGCTTTTAGATGAAGTAGAAAAGGCGCATCCTGATGTTTTTAATATCCTTCTCCAAGTGTTAGACGATGGA
CGCATTACGGATTCACAAGGGCGAGTCATTGATTTTCGGAATACAATTATTGTGATGACCAGCAACATCGGGGGTGATGA
TATCTTACAGTTTTCTCAAGAAGATTCTCAGTATGAACAAATGCGGAAGAAAGTTTTGGAAGCATTACGAACCCATTTCC
GTCCCGAATTTTTGAATCGTATTGATGATCTGATTATTTTCCATACTTTGAAACGAGAAGAACTCGCAGAAATTATTACC
ATTCAACTGCGACGCATCGAGAAACTGTTATCTCAACAAAAACTAACTATTAAATTGACAGCCGCCGCTCAAAATTATTT
AGTTGATGTGGGATATGATCCCGTATATGGCGCACGTCCGCTAAAACGAGCGATTCAACGGGAGTTAGAAAACCCAATTG
CAACTAAAATCCTAGAAATGGCATTTGGAGAAGGGGATACAATTCTTGTCGATTGTGTTGAGAATCAACTGGTTTTCAAA
AAAGAAGAAGAAGCGCCATCAGTAGCGGTGGAAGTCGTATCTTAA

Protein sequence :
MQPTDPSKFTQQAWDVIVDSQEVARRFKNQELEVEHLMLTLFSTEGVANQILEAKKIDVSRLQQQLEVFTNRQRKSMRVE
QLYLGRGLDQLLDRAEKARQSWEDEVIGVEHLLLGFAEDDRVGRRVLRPYSVDPQDIEAAIKEFRANRPPDQESAAEGEQ
EKEKEEEQTPLEKYGRDLTEQASGGKLDPVIGRDEEIRRVVQVLSRRSKNNPVLIGEPGVGKTAIAEGLAQRIVNGDVPD
SLKNRSLIALDMGSLIAGAKYRGEFEDRLRKVLHEVTHSEGQIVLFIDELQTVVGTGSGQGTMDAGNLLKPMLARGELRC
IGATTLDEYRKHIEKDPALERRFQQVYVKQPDVEATVSILRGLKERYEVHHGVKITDSALVAAASLSDRYITERFLPDKA
IDLVDEAAAKLKMEITSKPTELESIDRRLMQLQMEKLSLEGEDELAKNNSSAYRSAKERLEKIQQEMEELESSQKELSSQ
WQSEKQMLEEINALKEEEDQLRVQVEQAEREYDLEKAAQLKYGQLEGLQRQRENKESKLLDMQSQGRTLLREQVTESDIA
EIVAKWTSIPVNRLLESERQRLLGLEGYLHERVIGQKEAVSAVSAAIRRARAGMKDPARPIGSFLFMGPTGVGKTELARA
MAEFLFDTEESLIRIDMSEYMEKHSVSRLVGAPPGYVGYEEGGQLSEQIRRRPYSVVLLDEVEKAHPDVFNILLQVLDDG
RITDSQGRVIDFRNTIIVMTSNIGGDDILQFSQEDSQYEQMRKKVLEALRTHFRPEFLNRIDDLIIFHTLKREELAEIIT
IQLRRIEKLLSQQKLTIKLTAAAQNYLVDVGYDPVYGARPLKRAIQRELENPIATKILEMAFGEGDTILVDCVENQLVFK
KEEEAPSVAVEVVS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
STY0294 NP_454876.1 ClpB-like protein Not tested SPI-6 Protein 8e-93 41
aec27 YP_851418.1 ATPase Not tested PAI II APEC-O1 Protein 7e-95 41
aec27 AAQ96721.1 Aec27 Not tested AGI-1 Protein 6e-95 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Dacsa_2739 YP_007172671.1 ATP-dependent chaperone ClpB VFG2084 Protein 2e-98 43