Gene Information

Name : PCC7418_3125 (PCC7418_3125)
Accession : YP_007169458.1
Strain : Halothece sp. PCC 7418
Genome accession: NC_019779
Putative virulence/resistance : Virulence
Product : winged helix family two component transcriptional regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3379880 - 3380632 bp
Length : 753 bp
Strand : -
Note : PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal; COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR001867; KEGG: cyc:PCC7424_36

DNA sequence : 
ATGCTGTCTCTTGATATACCAAAAACTTCTTCCAGTCAGGAATTTACTCAATCTGCTCGCATTCTCGTCGTCGAAGATGA
AGACTTAATTCGAGAAATGGTCGTCCTTTCCCTAAAAGAAGAAGGTTATGAAGTTTCTATAGCAACAGATGGACGAACTG
CTTCTAATCTCTTACAAGCAGAAGACCCCAATAGTCCAGAGTTTCCTTACGATCTGATTGTTTTAGATTTGATGTTACCG
CAAATTAACGGACTAGATATTTGCCGTTGGCTACGGTATCAGGGCAATATTATCCCTGTACTCATTTTAAGTGCTAAAGC
AAGCGAAACCGATCGCGTTTTAGGCTTAGAAGTGGGTGCAGACGACTACATTACCAAACCCTTTAGTATGCCCGAGTTTA
TCGCTCGCTGTCGGGCTTTATTACGACGACAACGGTTTAGCAGCTTCCCCCAAAGCCCTGTCCTGCAATATCAAGATATT
ACCCTGTTTCCTCAAGAATGTCGCGTTACTGTTCGCGGAGAAGAGATTAGCCTCTCACCCAAAGAATTTAAACTGCTAGA
ACTCTTTATTGGTTCTCCTCGTCGCGTTTGGTCACGAGAACAACTCATTGAGCAAATCTGGGGCCCAGACTTTCTCGGTG
ATACCAAAACCGTTGATGTTCATATTCGCTGGTTACGAGAAAAATTAGAACCCGATCCCTCTCACCCCTCATATATTGTT
ACAGTGCGAGGTTTTGGCTATCGGTTCGGTTAA

Protein sequence : 
MLSLDIPKTSSSQEFTQSARILVVEDEDLIREMVVLSLKEEGYEVSIATDGRTASNLLQAEDPNSPEFPYDLIVLDLMLP
QINGLDICRWLRYQGNIIPVLILSAKASETDRVLGLEVGADDYITKPFSMPEFIARCRALLRRQRFSSFPQSPVLQYQDI
TLFPQECRVTVRGEEISLSPKEFKLLELFIGSPRRVWSREQLIEQIWGPDFLGDTKTVDVHIRWLREKLEPDPSHPSYIV
TVRGFGYRFG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 2e-36 42
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 2e-36 42
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 8e-28 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PCC7418_3125 YP_007169458.1 winged helix family two component transcriptional regulator AE016830.1.gene1681. Protein 2e-44 45
PCC7418_3125 YP_007169458.1 winged helix family two component transcriptional regulator NC_012469.1.7685629. Protein 1e-41 44
PCC7418_3125 YP_007169458.1 winged helix family two component transcriptional regulator NC_013450.8614146.p0 Protein 2e-36 43
PCC7418_3125 YP_007169458.1 winged helix family two component transcriptional regulator NC_002951.3238224.p0 Protein 2e-36 43
PCC7418_3125 YP_007169458.1 winged helix family two component transcriptional regulator AE015929.1.gene1106. Protein 6e-34 43
PCC7418_3125 YP_007169458.1 winged helix family two component transcriptional regulator NC_007793.3914065.p0 Protein 2e-36 43
PCC7418_3125 YP_007169458.1 winged helix family two component transcriptional regulator NC_002758.1121390.p0 Protein 2e-36 43
PCC7418_3125 YP_007169458.1 winged helix family two component transcriptional regulator NC_010079.5776364.p0 Protein 2e-36 43
PCC7418_3125 YP_007169458.1 winged helix family two component transcriptional regulator NC_002952.2859858.p0 Protein 2e-36 43
PCC7418_3125 YP_007169458.1 winged helix family two component transcriptional regulator NC_007622.3794948.p0 Protein 2e-36 43
PCC7418_3125 YP_007169458.1 winged helix family two component transcriptional regulator NC_003923.1003417.p0 Protein 2e-36 43
PCC7418_3125 YP_007169458.1 winged helix family two component transcriptional regulator NC_002952.2859905.p0 Protein 3e-40 43
PCC7418_3125 YP_007169458.1 winged helix family two component transcriptional regulator NC_002745.1124361.p0 Protein 2e-40 43
PCC7418_3125 YP_007169458.1 winged helix family two component transcriptional regulator NC_009782.5559369.p0 Protein 2e-40 43
PCC7418_3125 YP_007169458.1 winged helix family two component transcriptional regulator NC_002951.3237708.p0 Protein 2e-40 43
PCC7418_3125 YP_007169458.1 winged helix family two component transcriptional regulator NC_007622.3794472.p0 Protein 3e-40 43
PCC7418_3125 YP_007169458.1 winged helix family two component transcriptional regulator NC_003923.1003749.p0 Protein 2e-40 43
PCC7418_3125 YP_007169458.1 winged helix family two component transcriptional regulator NC_002758.1121668.p0 Protein 2e-40 43
PCC7418_3125 YP_007169458.1 winged helix family two component transcriptional regulator NC_009641.5332272.p0 Protein 2e-40 43
PCC7418_3125 YP_007169458.1 winged helix family two component transcriptional regulator NC_013450.8614421.p0 Protein 2e-40 43
PCC7418_3125 YP_007169458.1 winged helix family two component transcriptional regulator NC_007793.3914279.p0 Protein 2e-40 43
PCC7418_3125 YP_007169458.1 winged helix family two component transcriptional regulator HE999704.1.gene2815. Protein 6e-44 42
PCC7418_3125 YP_007169458.1 winged helix family two component transcriptional regulator AE000516.2.gene3505. Protein 3e-36 42
PCC7418_3125 YP_007169458.1 winged helix family two component transcriptional regulator CP001918.1.gene5135. Protein 1e-20 42
PCC7418_3125 YP_007169458.1 winged helix family two component transcriptional regulator HE999704.1.gene1528. Protein 9e-31 41
PCC7418_3125 YP_007169458.1 winged helix family two component transcriptional regulator FJ349556.1.orf0.gene Protein 3e-37 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PCC7418_3125 YP_007169458.1 winged helix family two component transcriptional regulator VFG1390 Protein 3e-40 43
PCC7418_3125 YP_007169458.1 winged helix family two component transcriptional regulator VFG1702 Protein 8e-37 42
PCC7418_3125 YP_007169458.1 winged helix family two component transcriptional regulator VFG1563 Protein 1e-36 42
PCC7418_3125 YP_007169458.1 winged helix family two component transcriptional regulator VFG0596 Protein 3e-28 41