Gene Information

Name : PCC7418_1199 (PCC7418_1199)
Accession : YP_007167615.1
Strain : Halothece sp. PCC 7418
Genome accession: NC_019779
Putative virulence/resistance : Virulence
Product : ATPase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1310057 - 1312528 bp
Length : 2472 bp
Strand : +
Note : PFAM: AAA domain (Cdc48 subfamily); C-terminal, D2-small domain, of ClpB protein; Clp amino terminal domain; ATPase family associated with various cellular activities (AAA); UvrB/uvrC motif; COGs: COG0542 ATPase with chaperone activity ATP-binding subunit

DNA sequence :
ATGTTTGAACGCTTCACAGAAAAAGCAATTAAGGTGATTATGCTTGCCCAAGAGGAAGCACGTCGCCTCGGTCATAACTT
CGTTGGCACAGAACAAATCCTTCTTGGCTTAATCGGAGAAGGAACAGGGGTTGCAGCGAAGGTTCTCAAATCAATGGGAG
TCAATCTCAAAGATGCTCGCATTGAAGTGGAAAAAATTATTGGACGCGGTTCAGGCTTTGTTGCCGTTGAAATTCCTTTC
ACTCCTAGAGCGAAACGAGTTTTAGAGCTTTCTCTTGAAGAAGCACGGCAATTGGGACATAACTATATTGGAACCGAACA
CCTTCTTCTCGGGTTGATTCGCGAAGGAGAAGGGGTCGCAGCCCGCGTCCTAGAAAACTTAGGGGTTGACCTCTCCAAAG
TCCGCACGCAAGTGATTCGGATGTTAGGGGAAACCGCCGAAGTTTCCAGTGGTTCGAGTCAAGGACGGACAAAAACGCCC
ACCCTCGATGAATTTGGTTCTAATCTCACCCAACTTGCCACCGATAGTAAACTCGATCCCGTGGTCGGTCGTCAAAATGA
AATTGAGCGGGTGATCCAAATTCTGGGTCGTCGCACGAAAAACAATCCCGTTTTGATTGGTGAACCTGGGGTGGGTAAAA
CCGCGATCGCGGAAGGATTAGCCCAGCGCATCTCCAATGAAGATGTTCCCGACATCCTCGAAAACAAACGGGTGGTCACC
CTCGATATTGGTTTACTCGTTGCAGGAACAAAATATCGCGGGGAATTTGAAGAGCGTCTGAAAAAAATCATGGACGAAAT
TCGTCAAGCTGGAAATGTGATCCTAGTCATTGACGAAGTTCATACTTTGATCGGTGCAGGAGCAGCAGAAGGCGCAATTG
ATGCAGCGAATATCCTCAAACCTGCCTTAGCGCGAGGAGAACTGCAATGTATCGGTGCAACCACTCTCGATGAGTATCGC
AAACACATTGAGCGAGATGCAGCGTTAGAACGTCGGTTCCAACCCGTGATGGTGGGAGAACCCACAGTAGAAGATACCGT
GGAAATCCTCTTTGGCTTGCGCGATCGCTATGAACAGCACCACAAGCTGAGAATTACTGATGCAGCATTGGATGCAGCAG
CAAAACTGTCTGATCGTTACATCAGCGATCGCTATCTTCCCGATAAAGCGATTGACCTGATTGATGAGGCGGGTTCTCGG
GTGCGTTTGATTAACTCGCAACTGCCTCCCGCAGCAAAAGAACTGGATGAAGAACTGCGTCAAGTGCTCAAGCAAAAAGA
TGACGCGGTACGCTCTCAAGACTTTGATCGGGCGGGAGAACTGCGCGATCGCGAGATGGAAATCAAGAGCGAAATCCGTT
CTCTTGCCTCTGCGAAAAATACAGAAACCAGCCAAGATGACCAAGTCGGTCCCGTGGTTGATGTGGAAGAAATCGCCCAC
ATCGTCGCCTCTTGGACAGGCGTTCCCGTCAGCAAGATTACCGAAACTGAATCGGAAAAACTGCTGCACATGGAAGGCAC
CTTGCACGAGCGTCTCATCGGTCAAGAAGAAGCGGTTCGCGCCGTTTCCCGCGCCATCCGTCGCGCCCGTGTTGGTCTGA
AAAATCCCAACCGCCCGATCGCGAGCTTTATCTTCTCCGGTCCCACAGGTGTTGGTAAAACTGAGTTGACCAAGGCATTA
GCGACCTACTTCTTCGGTTCAGAAGAAGCCATGATTCGCCTCGATATGTCTGAATTCATGGAACGCCATACGGTTTCCAA
GCTCATTGGTTCGCCTCCAGGCTACGTGGGCTACAACGAAGGCGGACAACTAACCGAAGCGGTGCGTCGTCGTCCTTATA
CCGTGGTTCTCTTTGATGAGATTGAAAAAGCCCACCCCGATGTCTTCAATATGCTCCTGCAAATTTTAGAAGACGGTCGT
CTAACTGATGCGAAAGGTCGCACGGTCGATTTCAAAAACACCTTGCTCATCATGACCTCCAATATTGGGTCTAAGGTCAT
CGAAAAAGGTGGTGGCGGACTTGGCTTTGAACTCGACGAAGACCAAGCCGAATCGCAATATAACCGCATTCGTTCCCTCG
TTAACGAAGAATTGAAGCAATACTTCCGTCCCGAATTCCTCAACCGTCTTGACGAAATCATCGTCTTCCGTCAACTCAAC
CGTGAGGAAGTCAAGGAAATTGCCGAAATTATGCTGCACGAAGTCTTCTCGCGTTTGACCGAGCAAGAAATTAAGCTGGA
AGTGACCGAGGCGTTCAAAGAGCGATTAGTCGAAGAAGGGTACAGCCCCAGTTATGGTGCGCGTCCGCTTCGCCGAGCGA
TTATGCGCTTGTTAGAAGATATCCTCGCTGAGGAAATTCTCTCTGGTCGCCTAAGCGAAGGAGATACAGCCACCGTTGAT
GTGGTGGAAGGGGATGTAAAAGTCTTCCCACAGGAGAAGAAAAAAGAGTTACTTCCTCAAGGATCAGAGTAA

Protein sequence :
MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKDARIEVEKIIGRGSGFVAVEIPF
TPRAKRVLELSLEEARQLGHNYIGTEHLLLGLIREGEGVAARVLENLGVDLSKVRTQVIRMLGETAEVSSGSSQGRTKTP
TLDEFGSNLTQLATDSKLDPVVGRQNEIERVIQILGRRTKNNPVLIGEPGVGKTAIAEGLAQRISNEDVPDILENKRVVT
LDIGLLVAGTKYRGEFEERLKKIMDEIRQAGNVILVIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYR
KHIERDAALERRFQPVMVGEPTVEDTVEILFGLRDRYEQHHKLRITDAALDAAAKLSDRYISDRYLPDKAIDLIDEAGSR
VRLINSQLPPAAKELDEELRQVLKQKDDAVRSQDFDRAGELRDREMEIKSEIRSLASAKNTETSQDDQVGPVVDVEEIAH
IVASWTGVPVSKITETESEKLLHMEGTLHERLIGQEEAVRAVSRAIRRARVGLKNPNRPIASFIFSGPTGVGKTELTKAL
ATYFFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYNEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMLLQILEDGR
LTDAKGRTVDFKNTLLIMTSNIGSKVIEKGGGGLGFELDEDQAESQYNRIRSLVNEELKQYFRPEFLNRLDEIIVFRQLN
REEVKEIAEIMLHEVFSRLTEQEIKLEVTEAFKERLVEEGYSPSYGARPLRRAIMRLLEDILAEEILSGRLSEGDTATVD
VVEGDVKVFPQEKKKELLPQGSE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
clpC YP_005163377.1 ATP-dependent Clp protease ATP-binding subunit Not tested Not named Protein 0.0 59

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PCC7418_1199 YP_007167615.1 ATPase VFG0079 Protein 0.0 60
PCC7418_1199 YP_007167615.1 ATPase VFG0080 Protein 6e-144 53